Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq5307 129 6e-25
seq717 118 1e-21
seq298 111 2e-19
seq56 96.9 3e-15
seq73 89.7 5e-13
>seq5307
Length=1324
Score = 129 bits (142), Expect = 6e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || |||||||| |||||||| | || |||||| |||
Sbjct 729 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCCCAGT 788
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | || || |||| ||||||| ||||| ||||| || || | |||||
Sbjct 789 GACACTATTGAGAATGCC-AAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 847
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| ||||||||||||||||| || | ||||| ||| ||||| ||
Sbjct 848 GCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAA 907
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| || || | || || || |||||||| ||| || |||| ||
Sbjct 908 TATCCAGAAAGAGTCCACTCTACACTTGGTGCTTCGTCTGCGAGGTGG 955
>seq717
Length=839118
Score = 118 bits (130), Expect = 1e-21
Identities = 160/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || |||||||| |||||||| | || |||||| |||
Sbjct 563669 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCCCAGT 563610
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| ||||||| ||||| ||||| || || | |||||
Sbjct 563609 GACACTATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 563550
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|||| || |||| || |||||||||||||| || | ||||| ||| |||| ||
Sbjct 563549 CAGCATCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTGTAAT 563490
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAG 38466
||||| || || | || ||||| |||||||| ||| || |||
Sbjct 563489 ATCCAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGAG 563447
>seq298
Length=2265018
Score = 111 bits (122), Expect = 2e-19
Identities = 162/227 (71%), Gaps = 3/227 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| | || || || || || |||||||| |||||||| || |||||| |||
Sbjct 584822 ATGCAGACCTTTGTGAAGACCCTGACGGGCAAGACCATCACACCTGAGGTCGAGCCCAGT 584763
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| ||| ||| ||||| ||||| || || | |||||
Sbjct 584762 GACACTATTGAGAATGTCAAAGCTAAA-TCCAAGACAAGGAGGGCATCCCACCTGACCAG 584704
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| | ||||||||||||||| || | ||||| ||| ||||| ||
Sbjct 584703 CAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTC--TGACTAGAAT 584646
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| || || | || ||||| |||||||| ||| || |||| ||
Sbjct 584645 ATCCAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGAGGTGG 584599
>seq56
Length=5443799
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/231 (70%), Gaps = 10/231 (4%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||| || || || || || || |||||||| |||||||| | || || ||| |||
Sbjct 2722714 ATGCGGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACACTGGAGGTTGAGCCCAGT 2722655
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | || | | |||||| ||||||| ||||| ||||| ||||| | |||||
Sbjct 2722654 GACACCATGGAGAATGTTAAAGCTAAAATCCAAGACAAGGAGGGCATTCCACCTGACCAG 2722595
Query 38364 CAGCGGC---TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|||| || | |||| || |||||||||||||| || | |||| |||||
Sbjct 2722594 CAGCAGCATCTGATTTTTGCAGGCAAACAGCTGGAGGA-----TATCTCTCA--GACTAT 2722542
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|| ||| | || || | || ||||| |||||||| | | || | ||| ||
Sbjct 2722541 AATATCTAGAAAGAGTCCACCCTGCACTTGGTGCTTCCTCTGTGGGGCAGC 2722491
>seq73
Length=4601553
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || | || || |||||||| |||||||| |||| |||||| |||
Sbjct 4089878 ATGCAGATCTTTGTGTAGACCCTGACGGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 4089937
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | |||| ||||||| ||||| ||||| || || | |||||
Sbjct 4089938 GACACTACTAAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 4089997
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
| || || |||| | |||||||||||||| || | || ||| | ||||||
Sbjct 4089998 CTGCATCTGATTTTTGTTGGCAAACAGCTGGAGGA----TGGACTCTCTCAGCCTACAAT 4090053
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455
||||| || || | || ||||| ||||||||
Sbjct 4090054 ATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 4090085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500125464896640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |