Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5307 129 6e-25 seq717 118 1e-21 seq298 111 2e-19 seq56 96.9 3e-15 seq73 89.7 5e-13 >seq5307 Length=1324 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | || |||||| ||| Sbjct 729 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCCCAGT 788 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | || || |||| ||||||| ||||| ||||| || || | ||||| Sbjct 789 GACACTATTGAGAATGCC-AAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 847 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||||||||||||||||| || | ||||| ||| ||||| || Sbjct 848 GCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAA 907 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || || || |||||||| ||| || |||| || Sbjct 908 TATCCAGAAAGAGTCCACTCTACACTTGGTGCTTCGTCTGCGAGGTGG 955 >seq717 Length=839118 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | || |||||| ||| Sbjct 563669 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCCCAGT 563610 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||||||| ||||| ||||| || || | ||||| Sbjct 563609 GACACTATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 563550 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 |||| || |||| || |||||||||||||| || | ||||| ||| |||| || Sbjct 563549 CAGCATCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTGTAAT 563490 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAG 38466 ||||| || || | || ||||| |||||||| ||| || ||| Sbjct 563489 ATCCAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGAG 563447 >seq298 Length=2265018 Score = 111 bits (122), Expect = 2e-19 Identities = 162/227 (71%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| | || || || || || |||||||| |||||||| || |||||| ||| Sbjct 584822 ATGCAGACCTTTGTGAAGACCCTGACGGGCAAGACCATCACACCTGAGGTCGAGCCCAGT 584763 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||| ||| ||||| ||||| || || | ||||| Sbjct 584762 GACACTATTGAGAATGTCAAAGCTAAA-TCCAAGACAAGGAGGGCATCCCACCTGACCAG 584704 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| | ||||||||||||||| || | ||||| ||| ||||| || Sbjct 584703 CAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTC--TGACTAGAAT 584646 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || ||||| |||||||| ||| || |||| || Sbjct 584645 ATCCAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGAGGTGG 584599 >seq56 Length=5443799 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||| || || || || || || |||||||| |||||||| | || || ||| ||| Sbjct 2722714 ATGCGGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACACTGGAGGTTGAGCCCAGT 2722655 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | || | | |||||| ||||||| ||||| ||||| ||||| | ||||| Sbjct 2722654 GACACCATGGAGAATGTTAAAGCTAAAATCCAAGACAAGGAGGGCATTCCACCTGACCAG 2722595 Query 38364 CAGCGGC---TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||| || | |||| || |||||||||||||| || | |||| ||||| Sbjct 2722594 CAGCAGCATCTGATTTTTGCAGGCAAACAGCTGGAGGA-----TATCTCTCA--GACTAT 2722542 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||| | || || | || ||||| |||||||| | | || | ||| || Sbjct 2722541 AATATCTAGAAAGAGTCCACCCTGCACTTGGTGCTTCCTCTGTGGGGCAGC 2722491 >seq73 Length=4601553 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || | || || |||||||| |||||||| |||| |||||| ||| Sbjct 4089878 ATGCAGATCTTTGTGTAGACCCTGACGGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 4089937 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| ||||||| ||||| ||||| || || | ||||| Sbjct 4089938 GACACTACTAAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 4089997 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 | || || |||| | |||||||||||||| || | || ||| | |||||| Sbjct 4089998 CTGCATCTGATTTTTGTTGGCAAACAGCTGGAGGA----TGGACTCTCTCAGCCTACAAT 4090053 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||| || || | || ||||| |||||||| Sbjct 4090054 ATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 4090085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500125464896640