Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq265 141 2e-28 seq808 136 9e-27 seq331 136 9e-27 seq376 113 1e-19 seq5307 109 1e-18 seq717 109 1e-18 seq647 105 1e-17 seq71 105 1e-17 seq298 95.1 3e-14 seq45 89.7 1e-12 seq416 86.0 1e-11 >seq265 Length=2261556 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| | Sbjct 841133 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 841074 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| ||| ||| || || |||||||| ||||| Sbjct 841073 CCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCC 841014 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || || ||||| ||| || || ||||| Sbjct 841013 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTG 840954 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| ||||| | ||||| Sbjct 840953 ATGGTCTTCCCGGTAAGGGTTTTCACGAAAATCTGCAT 840916 >seq808 Length=762264 Score = 136 bits (150), Expect = 9e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCT 194981 |||||||| ||||| |||||||||||||| |||||||| ||||| || | ||||| | | Sbjct 448029 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGATATGT 447970 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || ||||| |||| ||| || || |||||||| ||||| Sbjct 447969 -CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 447911 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || ||| || || || || || || || ||| || || ||||| Sbjct 447910 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGGGT 447851 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| | ||| | ||||| Sbjct 447850 GATGGTCTTCCCAGTAAGGGTTTTCATGAAAATCTGCAT 447812 >seq331 Length=2147541 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| | Sbjct 851459 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 851400 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| ||| ||| || || |||||||| ||||| Sbjct 851399 CCATCTTCCAGTTGCTTGCCAGCAAAGATCTGTCTTTGCTGATCAGGAGGAATTCCTTCC 851340 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || || ||||| ||| | | ||||| Sbjct 851339 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGCCTTGAGGGTG 851280 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || || ||||| ||||| | ||||| Sbjct 851279 ATGGTCTTCCCGGTAAAGGTTTTCACGAAAATCTGCAT 851242 >seq376 Length=1527771 Score = 113 bits (124), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| Sbjct 1196500 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 1196441 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || | ||||| |||| ||| || || |||||||| ||||| Sbjct 1196440 CCATCTTCCAGTTGCTTGCCAGTAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 1196381 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || ||| || || || || || ||||| ||| || || ||||| Sbjct 1196380 TTATCCTG-------GCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCCAGGGTG 1196328 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | ||||| || || | || || ||||| Sbjct 1196327 ATGGTCTTCCCAGTAAGGGTCTTCACGAA 1196299 >seq5307 Length=1324 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||||| || ||||| || || | ||||| | ||||| || ||||| Sbjct 932 GTGTAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCAGCTG 873 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || || || || ||||| || || ||||| || |||||||| ||||| Sbjct 872 TTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 813 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| | |||||||| ||||| ||| || || ||||| || | ||||| || Sbjct 812 AGCTTTGGCATTCTCAATAGTGTC---ACTGGGCTCGACCTCAAGTGTGATGGTCTTGCC 756 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 755 CGTCAGGGTCTTCACAAAGATCTGCAT 729 >seq717 Length=839118 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||||| || ||||| | || | ||||| | ||||| || ||||| Sbjct 563466 GTGCAGAGTGGACTCTTTCTGGATATTACAGTCTGAGAGAGTGCGGCCATCCTCCAGCTG 563525 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||||| || || || | || ||||| || || ||||| || |||||||| ||||| Sbjct 563526 TTTGCCTGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 563585 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| |||||||| ||||| ||| || || ||||| || | ||||| || Sbjct 563586 AGCTTTGACATTCTCAATAGTGTC---ACTGGGCTCGACCTCAAGTGTGATGGTCTTGCC 563642 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 563643 CGTCAGGGTCTTCACAAAGATCTGCAT 563669 >seq647 Length=1105866 Score = 105 bits (116), Expect = 1e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 194940 AAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTT 194999 |||||||||||| |||||||| ||||| || | | ||| | |||||||| || ||||| Sbjct 850251 AAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTT 850192 Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 || | ||||| |||| ||| || || |||||||| ||||| || || || || || Sbjct 850191 GCCAGTAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGAC 850132 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 ||| || || || || || || || ||| | ||||| || || ||||| || || | Sbjct 850131 CTTTACATTTTCTATTGTATCTGAGGGTTCAGCCTCAAGAGTGACGGTCTTCCCAGTAAG 850072 Query 195120 AGTTTTTACGAACACTTGCAT 195140 |||| | ||| | ||||| Sbjct 850071 CGTTTCCATGAAAATCTGCAT 850051 >seq71 Length=4921646 Score = 105 bits (116), Expect = 1e-17 Identities = 120/161 (75%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| |||||| | | ||| | Sbjct 1110215 AGTCTCAATACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAA----CCAAAGTACGT 1110270 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| || | ||| || || ||||| |||| ||| || || |||||||| ||||| Sbjct 1110271 CCCTCTTCCAGTTACTTGCCAGCAAAGATTAGTCTTTGCTGATCAGGAGGAATTCCTTCC 1110330 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || | || || || ||| || || || || || ||||| Sbjct 1110331 TTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGA 1110371 >seq298 Length=2265018 Score = 95.1 bits (104), Expect = 3e-14 Identities = 110/145 (76%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||||| || ||||| || || | ||||| | ||||| || ||||| Sbjct 584622 GTGCAGAGTGGACTCTTTCTGGATATTCTAGTCAG--AGAGTGCGGCCATCCTCCAGCTG 584679 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || | || || || || || ||||| || || ||||| || |||||||| | || Sbjct 584680 TTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGA--TT 584737 Query 195057 TTGC-TTGACGTTCTCAATGGTGTC 195080 | || ||||| |||||||| ||||| Sbjct 584738 TAGCTTTGACATTCTCAATAGTGTC 584762 >seq45 Length=5545317 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||||| || ||||| || || | ||||| ||||| || ||||| Sbjct 1737695 GTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGACCATCCTCCAGCTG 1737754 Query 194997 CT-TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 | || | || || || | || ||||| || || ||||| || |||||||| |||| Sbjct 1737755 TTGGCCCCACAAAAATCAGACTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTT 1737814 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||||| |||||| ||||||| | ||| || || || || | ||||| |||| Sbjct 1737815 TAGCTTTGACATTCTCAGTGGTGTCAG-GCTT--GACCTCGAGTGTGATGGTCTTGCCTG 1737871 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | ||||| Sbjct 1737872 TCAGGGTCTTCACAAAAATCTGCAT 1737896 >seq416 Length=1521731 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| |||||||||||||||||||| | | |||| ||||| || | | ||| | Sbjct 880270 AGTCTCAACACAAGGTGAAGAGTGGACTCCTGTGGAATGTTGTAGTCAGACAAAGTGCGT 880329 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || | || || | || || ||| | |||| ||| || | |||||||| ||||| Sbjct 880330 CCCGCTGCCAGTTGTCTGCCAGCAAAGCTCAGTCTTTGCTGAACAGGAGGAATTCCTTCC 880389 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG--AACTTTCCACTTCAAGGG 195100 || | || || || ||| | || || || ||| || | ||| || || || | Sbjct 880390 TTAACCTGGATCTTGACCTTTCCATTTTC--TGTTGTACGCAAGGGTTCAACCTCGAGAG 880447 Query 195101 TAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| || | ||||| | ||| | |||||| Sbjct 880448 TAATGGTTTTTCCAGTAAGGGTTTTCATGAAAATTTGCAT 880487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109373976470957