Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5307 118 7e-22 seq717 114 8e-21 seq298 98.7 6e-16 seq73 91.5 1e-13 seq56 87.8 1e-12 >seq5307 Length=1324 Score = 118 bits (130), Expect = 7e-22 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| || |||||||| || || | || |||| ||| Sbjct 937 ACCAAGTGTAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCC 878 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || || || |||||||| | || | ||||||||||| Sbjct 877 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 818 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||| | || || || | |||| || ||| || || | || ||||| | Sbjct 817 ATTTTAGCTTTG--GCATTCTCAATAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCT 760 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||||||||||||||||||| Sbjct 759 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 729 >seq717 Length=839118 Score = 114 bits (126), Expect = 8e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| || ||| |||| || || | || |||| ||| Sbjct 563461 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTACAGTCTGAGAGAGTGCGGCCATCCTCC 563520 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || || | |||||||| | || | ||||||||||| Sbjct 563521 AGCTGTTTGCCTGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 563580 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | |||| || ||| || || | || ||||| | Sbjct 563581 ATTTTAGCTTTGAC--ATTCTCAATAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCT 563638 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||||||||||||||||||| Sbjct 563639 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 563669 >seq298 Length=2265018 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| || || ||||| || || | || |||| ||| Sbjct 584617 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTCTAGTCAGAGAG--TGCGGCCATCCTCC 584674 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || |||| || || || |||||||| | || | ||||||||||| Sbjct 584675 AGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 584734 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | |||| || ||| || || || ||||| | Sbjct 584735 AT-TTAGCTTTGAC--ATTCTCAATAGTGTCACTGGGCTCGACCTCAGGTGTGATGGTCT 584791 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||||||||||| ||||||| Sbjct 584792 TGCCCGTCAGGGTCTTCACAAAGGTCTGCAT 584822 >seq73 Length=4601553 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| || || ||| | || || || |||| ||| Sbjct 4090082 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAGGCTGAGAGA----GTCCATCCTCC 4090027 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || |||| || || | ||||||| | || | ||||||||||| Sbjct 4090026 AGCTGTTTGCCAACAAAAATCAGATGCAGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 4089967 Query 34893 ATCTTCTGTTTGACGGATGCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || | | |||| || ||| || |||| || ||||| | Sbjct 4089966 ATTTTAGCTTTGAC--ATTCTTAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTCT 4089909 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||| ||||||||||||||| Sbjct 4089908 TGCCCGTCAGGGTCTACACAAAGATCTGCAT 4089878 >seq56 Length=5443799 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 14/214 (7%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||||| || |||||||| || || ||| ||| Sbjct 2722510 ACCAAGTGCAGGGTGGACTCTTTCTAGATATTATAGTCTGAGAGAT-------ATCCTCC 2722562 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTG---GTCTTGCGGCACCCCCTCCTTGTCG 34889 |||||||| || ||||| || || | ||||| ||| | || | ||||||||||| Sbjct 2722563 AGCTGTTTGCCTGCAAAAATCAGATGCTGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCT 2722622 Query 34890 CTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 || || ||| || || || || | |||| || |||||| || | || |||| Sbjct 2722623 TGGATTTTAGCTTTAAC--ATTCTCCATGGTGTCACTGGGCTCAACCTCCAGTGTGATGG 2722680 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || ||||| |||||||||||||||||| |||| Sbjct 2722681 TCTTGCCCGTCAGAGTCTTCACAAAGATCCGCAT 2722714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324603645550488