Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq5307 118 7e-22
seq717 114 8e-21
seq298 98.7 6e-16
seq73 91.5 1e-13
seq56 87.8 1e-12
>seq5307
Length=1324
Score = 118 bits (130), Expect = 7e-22
Identities = 154/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| |||||||| || |||||||| || || | || |||| |||
Sbjct 937 ACCAAGTGTAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCC 878
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || ||||| || || || |||||||| | || | |||||||||||
Sbjct 877 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 818
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||| | || || || | |||| || ||| || || | || ||||| |
Sbjct 817 ATTTTAGCTTTG--GCATTCTCAATAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCT 760
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| ||||| || ||||||||||||||||||||
Sbjct 759 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 729
>seq717
Length=839118
Score = 114 bits (126), Expect = 8e-21
Identities = 153/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| |||||||| || ||| |||| || || | || |||| |||
Sbjct 563461 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTACAGTCTGAGAGAGTGCGGCCATCCTCC 563520
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || ||||| || || | |||||||| | || | |||||||||||
Sbjct 563521 AGCTGTTTGCCTGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 563580
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||||| || || || | |||| || ||| || || | || ||||| |
Sbjct 563581 ATTTTAGCTTTGAC--ATTCTCAATAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCT 563638
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| ||||| || ||||||||||||||||||||
Sbjct 563639 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 563669
>seq298
Length=2265018
Score = 98.7 bits (108), Expect = 6e-16
Identities = 151/211 (72%), Gaps = 7/211 (3%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| |||||||| || || ||||| || || | || |||| |||
Sbjct 584617 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTCTAGTCAGAGAG--TGCGGCCATCCTCC 584674
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || |||| || || || |||||||| | || | |||||||||||
Sbjct 584675 AGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 584734
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||||| || || || | |||| || ||| || || || ||||| |
Sbjct 584735 AT-TTAGCTTTGAC--ATTCTCAATAGTGTCACTGGGCTCGACCTCAGGTGTGATGGTCT 584791
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| ||||| || |||||||||||| |||||||
Sbjct 584792 TGCCCGTCAGGGTCTTCACAAAGGTCTGCAT 584822
>seq73
Length=4601553
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/211 (70%), Gaps = 8/211 (4%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| |||||||| || || ||| | || || || |||| |||
Sbjct 4090082 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAGGCTGAGAGA----GTCCATCCTCC 4090027
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || |||| || || | ||||||| | || | |||||||||||
Sbjct 4090026 AGCTGTTTGCCAACAAAAATCAGATGCAGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 4089967
Query 34893 ATCTTCTGTTTGACGGATGCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||||| || || | | |||| || ||| || |||| || ||||| |
Sbjct 4089966 ATTTTAGCTTTGAC--ATTCTTAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTCT 4089909
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| ||||| || |||| |||||||||||||||
Sbjct 4089908 TGCCCGTCAGGGTCTACACAAAGATCTGCAT 4089878
>seq56
Length=5443799
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 14/214 (7%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| ||||||| || |||||||| || || ||| |||
Sbjct 2722510 ACCAAGTGCAGGGTGGACTCTTTCTAGATATTATAGTCTGAGAGAT-------ATCCTCC 2722562
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTG---GTCTTGCGGCACCCCCTCCTTGTCG 34889
|||||||| || ||||| || || | ||||| ||| | || | |||||||||||
Sbjct 2722563 AGCTGTTTGCCTGCAAAAATCAGATGCTGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCT 2722622
Query 34890 CTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947
|| || ||| || || || || | |||| || |||||| || | || ||||
Sbjct 2722623 TGGATTTTAGCTTTAAC--ATTCTCCATGGTGTCACTGGGCTCAACCTCCAGTGTGATGG 2722680
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || ||||| |||||||||||||||||| ||||
Sbjct 2722681 TCTTGCCCGTCAGAGTCTTCACAAAGATCCGCAT 2722714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324603645550488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |