Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq927 435 3e-117
seq138 120 3e-22
seq861 111 2e-19
seq636 111 2e-19
>seq927
Length=612318
Score = 435 bits (482), Expect = 3e-117
Identities = 664/937 (71%), Gaps = 9/937 (1%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||||||||||||| || || || ||| ||||| |||
Sbjct 153565 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCTATT 153622
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| || | ||||| || |||||||| ||||| || || || | ||| |||
Sbjct 153623 CTCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 153682
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
||||| || |||||||| |||| ||| | | || || | || || | || | |
Sbjct 153683 TCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGCTAAAACCCAGCTCCAGCATA 153742
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
||||| || || ||||||| ||| | ||||| | | |||||||| || || |
Sbjct 153743 AGTCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATGAGC 153802
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAAT 18908
|| || || | ||| ||||| || || || |||||||| |||| || | ||| | | ||
Sbjct 153803 TTCACCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACAGCAT-TGACAATTAT 153861
Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968
| ||| | | || ||| || || || ||||| ||||||| || |||||
Sbjct 153862 TTCTTTGACTTTCTGCTCCGAAGGTTTGTGTATCAGGTGTTTGAACATCAGGCAGGCAAA 153921
Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028
||||| |||| ||||| ||||| || || | ||| || |||||||| | |||| |||
Sbjct 153922 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGACAT 153981
Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088
|||||||| ||| || | ||||||||| || ||||| || ||||||||||| || |||||
Sbjct 153982 CAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 154041
Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148
||||| |||||||| || | | ||||||||| |||| || || | ||||||
Sbjct 154042 CACTGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACG 154101
Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208
|| |||||||| |||||||| || ||||| ||||||||||| || | || || ||| |
Sbjct 154102 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTGAAGAGACA 154161
Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268
| | || | | |||||||| ||| | || | | | ||| ||||| || |||||
Sbjct 154162 CTCCCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACTATACATCTCAGAATG 154221
Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328
| |||| || || || || || || || ||||| | |||||||| ||||| | |||
Sbjct 154222 -TTTGTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAATTTC 154280
Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388
| ||| | || ||||| |||||||| ||||| |||||||| || ||||| || ||
Sbjct 154281 TTGGCTAAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGC 154340
Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATAT 19447
| ||||| ||||||| | | ||||| | | || | | || ||| | | | |
Sbjct 154341 AAGAACATGGGATATAAAATATCTCTCATCAG-GCTTCAGGGCTTCCCAGTGCTGGAGGT 154399
Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507
| || || | ||| ||||| ||| |||||||||| |||||||| ||||| |||||||| |
Sbjct 154400 CCTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTCTTATACATCT 154459
Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
||| |||||| | |||| |||||||| | |||||
Sbjct 154460 GCCAAATATCATGGTATTCGATAGGAAAGACGACAAA 154496
>seq138
Length=3455650
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | ||| || |||||||| | |||||||||||||||| ||| |
Sbjct 2542790 CCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2542849
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 2542850 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCCACTGCGGCAAAAG 2542909
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 2542910 CCACAACACGTTCTCC 2542925
Score = 100 bits (110), Expect = 3e-16
Identities = 111/146 (76%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||||
Sbjct 2541259 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCT--GTTGGACTTGACATCACTCCCATT 2541316
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| || | ||||| || |||||||| ||||| || || || | ||| |||
Sbjct 2541317 CTCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 2541376
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
||||| || |||||||| |||| |||
Sbjct 2541377 TCCATGAAGTCAAATGGGTTTTCTAC 2541402
>seq861
Length=819057
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | |||||||| || |||||||| |||
Sbjct 774702 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 774643
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| | |||||||| || ||||| ||
Sbjct 774642 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAACTCCTTCTACAGCAGCAAAGGCC 774583
Query 19105 ACTAGTCTTTCTCC 19118
|| | ||||| ||
Sbjct 774582 ACCACCCTTTCCCC 774569
>seq636
Length=1077480
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | |||||||| | || || || || ||||||||||| || ||
Sbjct 918550 TGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 918491
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| |||
Sbjct 918490 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 918431
Query 47448 TTTCTTACTCCATA 47461
|| |||| |||||
Sbjct 918430 TTCCTTATACCATA 918417
Score = 102 bits (112), Expect = 9e-17
Identities = 124/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||| ||||||||||| | ||| ||| |||| || | ||| || || |
Sbjct 921799 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 921740
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| || || |||||||| || |||||||| ||||||||||| | | |||
Sbjct 921739 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAATGGTTT 921680
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
| || | || |||||||| || ||||||| ||| || | ||| |||||
Sbjct 921679 TCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTCAGGTCATCTGG 921631
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|| || | ||| || | || ||||| ||||| ||||||| |||| || | | ||
Sbjct 891287 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGGGTAAACCACCTCTCAGAAAGAAGGTTG 891228
Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719
|||||||||||| ||| ||| ||||| || || || || | |||||| | ||| |||
Sbjct 891227 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGATACCCTCATCAAC 891168
Query 48720 ATATATTGAGGTCTTTCA 48737
|||| |||||||||||||
Sbjct 891167 ATATGTTGAGGTCTTTCA 891150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562055603428440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |