Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq135 116 5e-21 seq325 109 7e-19 >seq135 Length=3792752 Score = 116 bits (128), Expect = 5e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || || |||| | | ||||| ||| ||||| | ||| ||||| Sbjct 595615 ACTGAGGAACTTACACGTTGCCAATTATACGCAACTCTCTGAGAATGACACCTGTGAGAT 595556 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| |||||||| ||||| ||| |||| |||||| | |||| || | ||| ||| || Sbjct 595555 CCACCTGACCTGCTCTGTGGAGAATCCAAATGACCATGTCTCATTGAGGTGGCAGGTCTC 595496 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 || || | |||||| || | |||||||| | |||||||||||| | || ||| Sbjct 595495 AGGAAACATACTTCTAGAGGAAGCAAACCTCACAATCTCCTGGGACCCTAAGACTTCCAG 595436 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTC 2438 ||| |||| ||| ||||| || || || |||| |||||| | || ||| Sbjct 595435 TGAACAGACCTATTTCTGCATAGCTGAGAATCCTGTCAGCAATTTATCCTTC 595384 >seq325 Length=1976410 Score = 109 bits (120), Expect = 7e-19 Identities = 104/132 (79%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 1884 CAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACACTGCCC 1943 ||||||||||| | ||| ||||| || ||||||||||| |||||||| ||||| || ||| Sbjct 1584643 CAAACCAGCTCAAACCCACTGATGGTAAATGGGGTGCT-GGGGAGTCGGTAACGCTTCCC 1584585 Query 1944 CTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGCACCTCC 2003 ||||| || || || || || |||||| |||||| | |||||| ||||| | || || Sbjct 1584584 CTGGAGTTCCCTGCTGGGGACAAGATCCAGTCCAGCCCCTGGCTTCACAACAGAACATCT 1584525 Query 2004 ATCGCCTTTATT 2015 || |||| ||| Sbjct 1584524 GTCACCTTCATT 1584513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629223646211160