Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq927 282 5e-71 seq861 107 2e-18 seq1 82.4 9e-11 >seq927 Length=612318 Score = 282 bits (312), Expect = 5e-71 Identities = 611/898 (68%), Gaps = 21/898 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||| ||| | ||||| ||||| |||| |||| || || || || ||||| |||| Sbjct 153610 CATCACTCCTATTCTCTGATACTCTCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 153668 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTAT--ATATAGTACTACA 36988 | ||||| ||||| ||||| || |||||||| || | || | | | || | ||| | Sbjct 153669 CCAGTGAAATATTCTCCATGAAGTCAAATGGGTTT--TCTACTCTGAAAATCTTGCTAAA 153726 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCA 37046 | ||| || ||| || || || |||||||| ||| | | ||||| || || Sbjct 153727 ACCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCA 153786 Query 37047 TAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTAT 37105 || || ||||| || || || || | ||| ||| ||| ||| | | || |||| | Sbjct 153787 A--TTCATCCCAATGAGCTTCACCGGCAATGCCTCTGTGAGGAACTCCTGTT-CTATCCT 153843 Query 37106 TACAGCATCTTTAACTATATTAACAATAACTT-CT--TCAGTTGGGGGATATTTTAAATA 37162 |||||||| || ||| | | | |||| || || | || | | | | | Sbjct 153844 TACAGCATTGACAATTATTT---CTTTGACTTTCTGCTCCGAAGGTTTGTGTATCAGGTG 153900 Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||| ||||| |||||||| |||||||| || || | ||| || Sbjct 153901 TTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTT 153960 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || | ||| | |||| ||| || | ||| ||||| | ||||||||| Sbjct 153961 GGAAAATGTGAGGCCAGACATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGA 154020 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 ||||||||||| || ||||| ||||| ||||| ||||||| |||| || | || | Sbjct 154021 ACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGC 154080 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || |||||| | |||||||||||| || ||||| ||||| Sbjct 154081 CTCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGT 154140 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 ||||| || || |||||| | | |||| | |||| | ||||| || ||| | || Sbjct 154141 CTCAATGGCGTTGAAGAGACACTCCCTTTCCTTGGAATCTTTAATATACGTGTCATTGAG 154200 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | ||||||||| ||||| || | ||| || | || || || || ||||| ||||| | Sbjct 154201 GAGACTATACATCTCAGAATGTTTGTTTCCA-TGGCAATTTGGAAGCCATAGAAACAGCG 154259 Query 37523 AGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 ||||| | |||| |||| || | ||||| || | ||||||||||| ||||| | Sbjct 154260 GGCTTCTG-TAATCTGAATTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTGACTATGC 154318 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATA 37641 ||||||| || ||||||||||||||||||| |||||||| ||| |||||| | Sbjct 154319 CATCACTCGCAGCAAAGAAAGCAAGAACATGGGATATAAAATATCTCTCATCAGGCTTCA 154378 Query 37642 ATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTG 37701 || ||| | | | || || || | ||| ||||| ||| | |||||||| | Sbjct 154379 GGGCTTCCCAGTGCTGGAGGTCCTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAG 154438 Query 37702 CCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 || || ||||||||| ||||||||||| | || || ||||| | ||||| Sbjct 154439 CCTCCGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGACGACAAA 154496 >seq861 Length=819057 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | ||||||||| | Sbjct 774704 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 774645 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || ||||||| ||||| || || ||||| | Sbjct 774644 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 774585 Query 37318 CTAC 37321 | || Sbjct 774584 CCAC 774581 >seq1 Length=12387654 Score = 82.4 bits (90), Expect = 9e-11 Identities = 180/270 (67%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 34825 TTCAAAAATTATCTGCGCAACTCTTTCACCCTTTGAAATATAAAATGTTGATTCTCCATT 34884 |||| |||| | ||| |||| || ||||||||| | | ||| || || ||| Sbjct 7595492 TTCACAAATGAGCTGTGCAATTCGGTCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAA 7595433 Query 34885 ATTAATTACGATAATACCAATATTACCTCTGTAATCCCTATCTATAACACCTCCACCTAT 34944 ||||| | | || ||||||||| ||||||||||| |||||| ||||| | ||||| Sbjct 7595432 ATTAAACAGTACAACACCAATATTTCCTCTGTAATCTTCATCTATGACACCAGCTCCTAT 7595373 Query 34945 ATCAATGTATTTATTCAAAGACAAACCTGATCTTGCAGCTATCCTACCATAACATCCTTC 35004 ||||||| | | || || ||| || || | || | ||| || ||||| || || Sbjct 7595372 ATCAATGAAATATTTTGCAGCCAAGCCAGAACATGGAACTACTCTTCCATAGCACCCAGA 7595313 Query 35005 TGGTATATCAAACATAATATCTGTTTTCACTAGTATTCTTTTTAGTGGGCTTATTTCATA 35064 || | | | | | ||| || |||||||||| ||| | | | || || | || Sbjct 7595312 AGGAAGAGCCATCTGAATGTCGGTTTTCACTACGATTTTCTCCATAGGTGGTAATGTGTA 7595253 Query 35065 ATCGTATGCACTATAAAGATCAAACCCAGC 35094 ||| || ||||| || || ||| | || || Sbjct 7595252 ATCATAGGCACTGTACAGGTCATAGCCCGC 7595223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592260744618840