Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq927 201 2e-46 seq418 172 1e-37 seq65 132 9e-26 seq636 96.9 6e-15 seq558 89.7 1e-12 >seq927 Length=612318 Score = 201 bits (222), Expect = 2e-46 Identities = 561/848 (66%), Gaps = 26/848 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||||||||||| |||||||| |||| || || ||||| Sbjct 153625 CTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 153684 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||||||| || ||||| | | | | | | | || | | |||| || ||||| Sbjct 153685 CATGAAGTCAAATGGGTTT--TCTACTCTGAAAATCTTGCTAAAACCCAGCT---CCAGC 153739 Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | || || || | || ||| | | ||| | ||| ||||| || ||| Sbjct 153740 ATAAGTCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATG 153799 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| ||||| |||| |||||| ||||||| |||||| || || | | | Sbjct 153800 AGCTTCACCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACAGCATTGACAATT 153859 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || | || || ||| || ||||||| |||||| ||| | | || |||| Sbjct 153860 ATTTCTTTGACTTTCTGCTCCGAAGGTTTGTGTATCAGGTGTTTGA---ACATCAGGCAG 153916 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | ||| || || || || | ||| || || ||||||| || ||| ||| Sbjct 153917 GCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCA 153976 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 | ||| | || | | ||||||||||| || | || ||||| ||||| |||||||| Sbjct 153977 GACATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATT 154036 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || |||||||| || || || | | ||||| | | ||| | ||||| ||| Sbjct 154037 CCTTCCACTGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATC 154096 Query 48314 C-AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 | | | ||| ||||| |||||||||||||||| || ||||| ||||| ||||| ||| Sbjct 154097 CAACGCAAG-GCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTGAA 154155 Query 48373 GAGCTTCTTGCACTCACCT--GCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTAC 48427 ||| || | || ||| | || || ||| || | |||| || | ||| Sbjct 154156 GAGACACT--CCCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACT---ATAC 154210 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 |||||||| || || || || || || ||||| || ||||| | ||| || Sbjct 154211 ATCTCAGAATGTTTGTT-TCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTA 154269 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | ||| | |||| | || | ||||| || || ||||||||||| ||||| ||| Sbjct 154270 ATCTGAATTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCA 154329 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607 |||||||| ||||| ||||| | |||| | ||| | | | || || | |||| Sbjct 154330 GCAAAGAAAGCAAGAACATGGGATATAAAATATCTCTCATCAGGCTTCAGGGCTTCCCAG 154389 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTT 48667 ||| | ||| ||| || |||||||| || | ||||| ||||| || ||||| Sbjct 154390 TGCTGGAGGTCCTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTC 154449 Query 48668 TTGTACAT 48675 || ||||| Sbjct 154450 TTATACAT 154457 >seq418 Length=1683594 Score = 172 bits (190), Expect = 1e-37 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 274863 AGCAGCTGGCAGCCGTTGCTGACGTGAGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 274804 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || | || || |||||||| || | ||||| |||||| Sbjct 274803 TCCCGGAGGAGGCCGGCAGTGCTCGAGAGCCCTGCGTTCTCCGCTTTGAGTGTCTTCACC 274744 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || ||||| || ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 274743 TTGTCCTCTAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 274684 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 274683 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 274624 Query 241625 GAC 241627 ||| Sbjct 274623 GAC 274621 >seq65 Length=5215179 Score = 132 bits (146), Expect = 9e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 1701222 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 1701281 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||||||||||||||| || |||| |||||| ||||| Sbjct 1701282 TCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 1701341 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| || || | |||||| || || | ||| || || |||||| Sbjct 1701342 TTGCGCTTGCGGCACTTGGAAGCAGCTATGCGGTTGCGCAGCCGCTTGCGCTCTGCCTTG 1701401 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| || || |||||||| || || ||| Sbjct 1701402 ATGCGCTCTTGCGTGTCCATGTCTATAGGCGAC 1701434 >seq636 Length=1077480 Score = 96.9 bits (106), Expect = 6e-15 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586 ||| ||||| | || || |||||||||||||||||| ||| || ||||||||||| || Sbjct 900622 TGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 900563 Query 213587 GTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCT 213645 | ||| ||| || | || ||||| |||||||||||||| |||| || |||||| || Sbjct 900562 G-TTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCT 900504 Query 213646 GGGAC 213650 | ||| Sbjct 900503 GAGAC 900499 >seq558 Length=1220228 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 156136 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 156195 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||| ||| Sbjct 156196 GCGATGCGGTTCCTCATGCGCTTTCTCTCCGCCTTGATCCGCTCCTGGGACTCCATATCG 156255 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 156256 ATGGGTGAC 156264 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 162978 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 163037 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||| ||| Sbjct 163038 GCGATGCGGTTCCTCATGCGCTTTCTCTCCGCCTTGATCCGCTCCTGGGACTCCATATCG 163097 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 163098 ATGGGTGAC 163106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931444642064640