Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_019517.1 Length=136947 Score E Sequences producing significant alignments: (Bits) Value seq6988 158 1e-33 seq4817 98.7 9e-16 >seq6988 Length=1074 Score = 158 bits (174), Expect = 1e-33 Identities = 216/302 (72%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 133661 TCCCGCATTAAGCCCAGCCAAATGGAGTGCTCCAGGCTATCATCGTAGTGCTCAAAATCC 133720 ||||||||||| |||| ||||||||| |||||||| | ||||||||| ||| || | Sbjct 463 TCCCGCATTAAACCCAACCAAATGGAATGCTCCAGCCCATCATCGTAATGCGTGAATGCG 522 Query 133721 CTTCCGGTATTGAATGGCGGGTCTATGTAAACACACTTCACTTTGCCTGCATACTCTTGC 133780 || ||||| || | |||||||| || |||| |||||||| || || | | | || ||| Sbjct 523 CTACCGGTGTTATAGGGCGGGTCGATAAAAACGCACTTCACCTTTCCAGAAAATTCCTGC 582 Query 133781 TCTAGTGCCTTCAATGCCAGTAAGTTATCGCCAAAAATCAGTTTATTATCAAAAATATCG 133840 || || ||||||| ||||| | ||| |||||||| ||||| ||||| || || ||| Sbjct 583 TCCAGCGCCTTCAGCGCCAGCAGGTTGTCGCCAAAGATCAGCCGGTTATCGAAGATGTCG 642 Query 133841 TTTTCGGTCACCTTTTTACTGGCGTGATAAGACTTGCTCGTGTCTTCTAACAAAATGCAC 133900 || || ||||| | | |||||||| ||||| || ||||| | || |||| | Sbjct 643 TTGTCCGTCACGCGATGCTTCGCGTGATATGACTTTTCCGGATCTTCCAGCAGGATGCGC 702 Query 133901 GGATCTAACTTTTTTCGCTCGTTTTTGCCTGTCCAGGTAAGCTCTAATTTGGTTTTGCTC 133960 || || | ||| |||| | ||||| |||| || || || | ||| |||||| Sbjct 703 GGCTCCAGCTTGGGCCGCTTCTCCTTGCCGATCCAAGTCAGTTCAAGTTTTTGCTTGCTC 762 Query 133961 AT 133962 || Sbjct 763 AT 764 >seq4817 Length=1474 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 132650 TCTTTCACAACCAAGTTCGGGGCAAGTTTATAATAGCGAAAGCCCCCGCCACCGTGCCAG 132709 || || || | || | | |||||||| |||||||| ||||| ||||| || | |||| Sbjct 1067 TCGTTGACGATCAGGCTGGGGGCAAGGCGGTAATAGCGGAAGCCGCCGCCGCCTTTCCAG 1126 Query 132710 TTTACAGATTTAGAAATACCACTTTGATCTTCGCCATCGATCACTTTTTGCAAGCGCGGG 132769 |||| || | | || | | || || ||||| ||||| || | || ||||||| Sbjct 1127 CCCACAGCTTCGGTGACGCCCCCCTTGTCCTCACCATCAATCACCTTCTTCAGGCGCGGG 1186 Query 132770 ATGATATGGGTATGACAATGATCACCTAGCTCGACCGAAATCCAACGTCTTTTCATCTTG 132829 ||||| |||||||| || || || || ||||| ||| ||||| || | ||| ||| Sbjct 1187 ATGATGTGGGTATGGCAGTGCTCGCCCAGCTCCACCATGATCCAGCGGCGCCCCATTTTG 1246 Query 132830 TGAGCTACAGCAGCAGTAGTTCCTGAACCGCCGAACGAATCCAAGACTAAATCCCCT 132886 || || || || | || || || ||||| |||| ||||| | || || || ||| Sbjct 1247 TGGGCCACCGCGCCGGTGGTGCCGGAACCAGCGAAGGAATCGAGTACCAAGTCTCCT 1303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438060939084120