Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq125 334 9e-87 seq177 158 1e-33 seq732 102 9e-17 >seq125 Length=3779757 Score = 334 bits (370), Expect = 9e-87 Identities = 670/985 (68%), Gaps = 11/985 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | |||| ||| || ||||| || Sbjct 18634 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCTGTGTCAAACTTATTGGC 18575 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| | | | | | ||||||| || ||| || | || || || || || Sbjct 18574 AAACAAGTGGTG--CATGC-GCAACATCCAGTTCAAGTCACCTGCTCCAAAAACACACAC 18518 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | || ||||||||||| |||||||| | || || || | || |||||||| Sbjct 18517 GGAGCGCACATGGACGCCGTTGCAGGGCGGGTAGGGGGCGCCCTTGGAAACATCACCTTC 18458 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| |||||||| || || || ||||||||||| |||| || || | Sbjct 18457 AAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGGACATGTCATACTTATG 18398 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | |||| | | || || || | || || | ||| | |||||||| || | || Sbjct 18397 GCTTAGGGACAGTGATCCTGGGACTTCAGGGATCCTCTGAATAGTGGCCCAGAGATACTC 18338 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| || | ||| ||||| |||| | |||| | | || Sbjct 18337 ATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATTTTTTCATTCTCTAG 18278 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 |||| || || || | || ||||| || || ||||| || || | ||| | Sbjct 18277 CACGTACTCCACATATTTCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTGT 18218 Query 160472 GGGTATAGGCGGCGTGTC-TTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| ||| ||| |||||| || ||||| | || | ||| || || | | Sbjct 18217 TTCAAGAGGAGGC-TGTAGTTTGTCAGTCCCTGTGTTTGTCAGCTTTCCATTAACAACTG 18159 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | | || |||||||| | | || | | |||||| || || || ||| ||| Sbjct 18158 TATAATGTTTTTTCCACCTTTCTTTTTTATTGGATGGCATTTTCTCAGTTTCGAGATTGT 18099 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | | || || || || || | | |||| || || ||||| || || | ||||| | Sbjct 18098 TTTCTCCCATTAGTGACTTGAGTTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 18039 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | ||||||| | ||||||| ||||||||| | || |||| || |||||| || Sbjct 18038 CCATACCGCAAAGATTTATCAAGTACTTCCAATCTGCACTCATTCTGTAGAGGTCCTGCA 17979 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 | || || | ||| ||||| || || ||||| || || ||||| ||| |||| || | || Sbjct 17978 TACAGTTGAGATCAGCCTGAACCCGACTCCACGATGCATACACCACGGTCTCCAGCTGAC 17919 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACA 160827 ||||||||||||| ||| |||||| || | || || ||| | |||| |||| | | Sbjct 17918 TGGCCACAAAGACATTACTGAAACAGGATGCAATGCCAATCACTGCAGCCAAAAAGGA-A 17860 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || || | ||| |||||| || | |||||| | ||||||||| |||||||||| Sbjct 17859 TC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGCCC 17802 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 || | ||| || ||||| || ||||| ||||| | ||| || || || ||||| |||| Sbjct 17801 GCAGGAGCCTGTCAAACATTTCAATCTTGTGATGAACCACTATGGAATATGCTATTGGAA 17742 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 ||| | ||| || ||| |||| | | ||||| ||| ||||||| ||| || Sbjct 17741 ACTTTGCCTCTTCTTTACTAAGGGGTTCTACAATATACTTGCGCTTCTTGATGAAAGAAG 17682 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 ||||| | |||||||| ||||| Sbjct 17681 TGCAATCACTAGTCATGTTTATATA 17657 >seq177 Length=2932736 Score = 158 bits (174), Expect = 1e-33 Identities = 225/317 (71%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || | ||| || || || || || |||||||||||| | Sbjct 2837915 AGAGTGAGGCAGGCTATTCCTGAGACCTTCCCGGAACCAAAGGTATTGAAGAGGCACTTA 2837974 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || || || ||||||| |||||| ||||| || || | |||||||| |||| ||| Sbjct 2837975 TAACACCCCTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTGGAGTCCC 2838034 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | || || ||||| | || ||||| | || || || ||||| || ||| ||| | Sbjct 2838035 AGCTCAGTGATGTTGATCTTGTCCTTATAGGCAGCCTGGACCACAACCCCATGGGTCTTG 2838094 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 |||||||| ||||||| || ||||| | ||||| || |||||||| || || | || Sbjct 2838095 CTGAAGGTCACCATGTTTTCTGGGCTTGCAGCCTTGATTTTCTGCCATGTCACAACCAAG 2838154 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | || | ||| || |||| | ||||| || ||||||||||| | | Sbjct 2838155 ACTTCCTGGGAAGTTTCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCTTTTTT 2838214 Query 168453 TCATCTTGAGTTACGAC 168469 |||||||| || || || Sbjct 2838215 TCATCTTGGGTCACCAC 2838231 >seq732 Length=870810 Score = 102 bits (112), Expect = 9e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 784787 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCGACATGAATGAATGAATCTGCT 784728 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || |||||||| |||| || || || || | ||||| ||||| | | || Sbjct 784727 GGAATATAATTTTCATAGTTTTCCCTAGATGGCCCCAGAACTACAGGTACAGAGCCAGCC 784668 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAA 176407 | || | ||||| |||||| | |||||| || |||| |||||||||||||| Sbjct 784667 AGAAAAGCATTGTAGAGCTTTTCGGTGATGTAATCTTTGTGGATTGAGTTTTCAAA 784612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577164573417960