Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq927 123 4e-23 >seq927 Length=612318 Score = 123 bits (136), Expect = 4e-23 Identities = 374/578 (65%), Gaps = 7/578 (1%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| ||| ||||||||| ||||||||| || | |||||| ||| || | Sbjct 153914 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGG 153973 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || | ||| | |||| ||| || ||||| ||||||||||| ||| || ||||||||| Sbjct 153974 CCAGACATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 154033 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337 || || || || || || |||| | | ||| || | | | ||| | Sbjct 154034 ATTCCTTCCACTGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCA 154093 Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTA 18397 ||||| ||||| ||| | | | ||| || || |||| || || || Sbjct 154094 ATCCAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTG 154153 Query 18398 AACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATT 18457 || | | || |||| ||||||||||| ||||| ||||| | | | | |||||| Sbjct 154154 AAGAGACACTCCCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACTATACATC 154213 Query 18458 TCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT 18517 ||||||||| || ||||||| || || || || | ||| || | | || || | | Sbjct 154214 TCAGAATGTTTG-TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATC 154272 Query 18518 TGAATCTC---GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||||| || ||| ||| | || ||||| || ||||| ||||| || ||| | Sbjct 154273 TGAATTTCTTGGCT---AAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCA 154329 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634 || || || || | ||||| || |||| | | |||| | ||| || | ||| Sbjct 154330 GCAAAGAAAGCAAGAACATGGGATATAAAATATCTCTCATCAGGCTTCAGGGCTTCCCAG 154389 Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGT 18694 | | | || || || ||||| ||||| || | ||||||||| || | || || | Sbjct 154390 TGCTGGAGGTCCTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTC 154449 Query 18695 TTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 || ||||| | ||||||| | | || |||||||| Sbjct 154450 TTATACATCTGCCAAATATCATGGTATTCGATAGGAAA 154487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731802737463600