Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5307 100 5e-16 seq416 87.8 3e-12 >seq5307 Length=1324 Score = 100 bits (110), Expect = 5e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||||| || || | || || |||| ||| | |||||| |||||||| Sbjct 961 ATGATACCACCTCGCAGACGAAGCACCAAGTGTAGAGTGGACTCTTTCTGGATATTATAG 902 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 ||||| | || || | || |||| ||||| || |||||||| | | ||| |||||| Sbjct 901 TCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCA 842 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || || || || ||||| |||||| ||| |||| ||||| || | Sbjct 841 GGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTGGCATTCTCAATAGTGTCACTGGGC 782 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| || || || | || || | || |||||||| Sbjct 781 TCGACCTCAAGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 729 >seq416 Length=1521731 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | || | ||| | ||| | | ||| || || || || Sbjct 880260 ACCACCACGAAGTCTCAACACAAGGTGAAGAGTGGACTCCTGTGGAATGTTGTAGTCAGA 880319 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| ||| | | ||| |||| | |||||||| | | ||| || || |||| || Sbjct 880320 CAAAGTGCGTCCCGCTGCCAGTTGTCTGCCAGCAAAGCTCAGTCTTTGCTGAACAGGAGG 880379 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| ||| | || || || ||| |||| | | ||| | | ||| || Sbjct 880380 AATTCCTTCCTTAACCTGGATCTTGACCTTTCCATTTTCTGTTGTACGCAAGGGTTCAAC 880439 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || |||||||||||||| ||||| | ||||| ||||| || ||||| || Sbjct 880440 CTCGAGAGTAATGGTTTTTCCAGTAAGGGTTTTCATGAAAATTTGCATCTT 880490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905050340191800