Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq927 131 5e-25 seq432 100 8e-16 >seq927 Length=612318 Score = 131 bits (144), Expect = 5e-25 Identities = 362/542 (67%), Gaps = 15/542 (3%) Strand=Plus/Minus Query 133103 GAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATTTTGGACTTCAACTGAAGTAGAT 133162 || ||||||||||||||||| ||| | | | || |||||||| | ||||| ||| Sbjct 154469 GATATTTGGCAGATGTATAAGAAAGCGGAGGCTTCCTTTTGGACAGCTGAGGAAGTGGAT 154410 Query 133163 TTATCCAAAGACC--CAGCCCACTGGGAAGCCCTTACTGGGGATGAAAAACATTTTATTT 133220 | ||||| |||| |||| ||||||||||||| | ||||| | | ||||||| | Sbjct 154409 CTCTCCAAGGACCTCCAGC--ACTGGGAAGCCCTGAAGCCTGATGAGAGATATTTTATAT 154352 Query 133221 CT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACA 133279 | ||| | || || || ||||||||||||||||| || || |||||| || | Sbjct 154351 CCCATGTTCTT-GCTTTCTTTGCTGCGAGTGATGGCATAGTCAATGAAAACTTGGTGGAG 154293 Query 133280 CGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCG 133339 ||||||| |||| |||| | | |||||||| || ||||| | || ||||| Sbjct 154292 CGGTTTAGCCAAGAAATTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCC 154233 Query 133340 ATGGAAAATATCCATTCTATCA--CATATTCTACTCTAATTGATACTTACATCAAAGATA 133397 |||| ||| | |||||| | ||| ||| ||| | ||| || || || |||||| Sbjct 154232 ATGG-AAACAAACATTCTGAGATGTATAGTCTCCTC--AATGACACGTATATTAAAGATT 154176 Query 133398 CCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAA 133456 || | | | | || |||||||||||| | || | | |||||| | || ||||| Sbjct 154175 CCAAGGAAAGGGAGTGTCTCTTCAACGCCATT-GAGACAATGCCTTGTGTCAAGAAGAAG 154117 Query 133457 TCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTT 133516 | || ||||| | ||||| |||||| || | | || ||| | || Sbjct 154116 GCAGATTGGGCCTTGCGTTGGATTGGGGACAAAGAGGCTACCTATGGAGAACGTGTTGTA 154057 Query 133517 GCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCT 133575 |||||||| | ||| || || || || || |||| | || ||| || || || ||||| Sbjct 154056 GCTTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTC-TTTTGCATCGATATTCTGGCT 153998 Query 133576 TAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGA 133635 || || | || | | |||| || ||||| |||||||||||| || || || Sbjct 153997 CAAGAAATGAGGACTGATGTCTGGCCTCACATTTTCCAACGAACTTATTAGCAGAGATGA 153938 Query 133636 GG 133637 || Sbjct 153937 GG 153936 >seq432 Length=1618426 Score = 100 bits (110), Expect = 8e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| || || || |||||||| || || || || ||||||||||||| ||||| Sbjct 214129 ACCAGTTTCAGCAGTCTTGACAGCTGTGTCGATGAGCCCCTCACGACCACCCATGGCATG 214188 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 214189 GAAAAAGAACTCGGTGGGTGTGAGGCCAGCCAGGTAGGAGTTCTCCACAAAGCCACGGCT 214248 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| || ||| |||| | ||||| ||||| |||| || || | || |||| Sbjct 214249 CTCAGGCCCATAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAATCCAAATGG 214308 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAA 302839 || ||||| || || ||||||||||| || | | | ||| | ||| |||| Sbjct 214309 AATCCGCTTGCCCTCCACGTTCTGCTGCCCGACGACAGCAATGACCTGGGAAA 214361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471674828633427