Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq382 136 4e-27 seq173 100 3e-16 seq138 98.7 9e-16 >seq382 Length=1977272 Score = 136 bits (150), Expect = 4e-27 Identities = 715/1132 (63%), Gaps = 66/1132 (6%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || || | ||| ||| || ||| |||| | | |||| | || | Sbjct 487280 ATGCCTTCTATGTTGCGGACCTGGAAGACATTCTGAAGAAACATCTGAAATGGTTAAAAG 487339 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | | || | || | | | Sbjct 487340 CTCTTCCTCGGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGAACCA-TAGTG 487398 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 ||||||||||||||| | || || |||||||||||||| ||| || || ||| | Sbjct 487399 AAGACCCTAGCTGCCATGGGGACAGGATTTGACTGTGCCAGCAAGACTGAAATACAGCTG 487458 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 | || | ||| || || | |||| ||||| | | ||| ||||||||||| || Sbjct 487459 GTACAGAGTCTAGGGGTACCTCCAGAAAGGATTATCTATGCAAATCCTTGTAAACAAGTG 487518 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||| || | | |||||| | ||||||||||||||||||||| Sbjct 487519 TCTCAGATTAAACATGCTGCCAATAATGGAGTCCAGATGATGACTTTTGATAGTGAAGTC 487578 Query 20504 GAGCTTACCAAAATTG--ATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAG 20561 ||| | | ||| ||| | || | | | || || |||||||| || |||| Sbjct 487579 GAGTTGATGAAAGTTGCCAGGGCAT--ATCCAGAGGCCAAGCTGGTTTTGCAGATTGCCA 487636 Query 20562 TGGATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCA 20621 ||||| || || ||| | | || ||||| || ||||| || | | || ||| Sbjct 487637 CTGATGATTCCAAAGCAGTCTGTCGTCTCAGTGTTAAATTTGGTGCCACACTCAAAACCA 487696 Query 20622 GCCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCC 20681 || | || | || || ||| | || | || || |||| |||||||||| Sbjct 487697 GCAGGCTGCTTTTGGAATGGGTGAAAGAGCTAAATATTGATGTCATCGTTGTCAGCTTCC 487756 Query 20682 ACGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGA 20741 | ||||| ||||||||| ||| | || | | | | | ||| |||| ||| ||| Sbjct 487757 ATGTGGGAAGTGGCTGCGCTGATCCTGAGACCTTCGTGCAGGTCATCTCTGACGCCCGGA 487816 Query 20742 GAGCTTTTGACTTTGGCACGCTGATGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | ||| ||| || || ||||||| || | ||||||||||| | Sbjct 487817 G-----CTGA------------GATTGGTTTCAACATGTATCTGCTTGATATTGGTGGTG 487859 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTA 20858 ||||| |||||||| |||| || ||| | ||||| || || | || || | Sbjct 487860 GCTTT-CCGGGATC--TGAGGATGTGAAGCTGAAATTTGAAGAGATCACCAGTGTAATCA 487916 Query 20859 ACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTG 20918 || | || |||| | | | || ||| | | ||||| | || | ||| || | Sbjct 487917 ACCCAGCGCTGGACAAGTACTTCCCATCAAACTCAGGAGTGACAGTCATAGCTGAGCCAG 487976 Query 20919 GCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA--GTG 20976 |||| ||||| | | | || || | || | || || | | | ||||| ||||| | Sbjct 487977 GCAGATACTATGTTGCATCCGCTTTCACGCTTGCAGTTAATATCATTGCCAAAAAACTCG 488036 Query 20977 TGTTGAAG--ACA------CTCC--TG---------------GAGATAAAAAGTTTATGT 21011 | || ||| ||| |||| || | || |||| ||||||| Sbjct 488037 TATTAAAGGAACAAATAGGCTCCGATGACGAAGATGAGTCGAGCGAAAAAACCTTTATGT 488096 Query 21012 ATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTC 21071 ||||||| |||||||| || || || ||||| ||||| | | | | || || | Sbjct 488097 ATTATGTGAATGATGGAGTGTACGGATCATTTAATTGCATCCTCTATGATCACGCCCACG 488156 Query 21072 CTATGCCTATGCTGCTTAAAGAA-AAACGC---CTTGAAGACAAAGACTATGTTTCTAGC 21127 | ||| | |||| |||| | ||| | || || | |||| || ||| Sbjct 488157 TGAAGCCCGTCCTGC----AGAAGAGGCGCAAACCAGATGAGAGGTACTACTCCTCCAGC 488212 Query 21128 ATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAG 21187 || ||||| || | || || ||| | ||| |||||||| |||| |||| |||| ||| Sbjct 488213 ATCTGGGGACCCACGTGTGACGGCCTCGATCGCATTGTTGAGCGCTGTGGCTTGCCCGAG 488272 Query 21188 CTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGCTCT 21247 | || |||||||||||| | | ||||| |||||||| ||||||| | | | | || Sbjct 488273 ATGCATGTGGGCGACTGGATGCTCTTTGAGAACATGGGTGCTTACACCGTCGCTGCCGCT 488332 Query 21248 TCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAGAG 21298 || || || ||||| || ||| || | || | | ||||||| || ||| || Sbjct 488333 TCTACTTTCAACGGATT-CCAGAGGCCGACCATCTACTATGTGATGTCAAAG 488383 >seq173 Length=3078528 Score = 100 bits (110), Expect = 3e-16 Identities = 470/735 (64%), Gaps = 15/735 (2%) Strand=Plus/Minus Query 20201 AATAATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTC 20260 || || ||||| | ||| | || || ||||| ||| || |||||||| | | |||| | Sbjct 2555206 AAGAACGCCTTCTATGTTGTGGACCTGGGAGACATTTTGAAGAGACATCTGAAATGGTTA 2555147 Query 20261 AAGGCTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGT 20319 || ||| | ||| || | || ||||| || || || | | || | || | | Sbjct 2555146 AACGCTCTTCCTCGGGTTACCCC-TTTTATGCAGTCAAATGCAATGATAGCAGAACCA-T 2555089 Query 20320 CCTCAAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCA 20379 | ||||||||||||||| || ||||| |||||||||||||| ||| || || | Sbjct 2555088 AGTGAAGACCCTAGCTGCCATTGGGACTGGATTTGACTGTGCCAGCAAGACTGAAATAGA 2555029 Query 20380 GTTACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCA 20439 | | || | ||| || || | |||| ||||| | | ||| ||||||||||| || Sbjct 2555028 ACTGGTACAGAGTCTTGGGGTGCCTCCAGAAAGGATTATCTATGCAAATCCTTGTAAACA 2554969 Query 20440 GCCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGA 20499 || || || | | | | || | | |||||| | ||||||||||||||||||| Sbjct 2554968 AGTGTCTCAGATTAAATGTACTGCCAATAATGGAGTCCAGATGATGACTTTTGATAGTGA 2554909 Query 20500 AGAAGAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAA 20559 || ||| ||| || ||| | || | | | ||| |||| || || || Sbjct 2554908 AGTCGAGTTTATGAACGTTGCCAGGGCACATCCAAAGCCCAAGTTGGTTTTGCGGGTTGC 2554849 Query 20560 AGTGGATGACTCTAACTCAGACAG-CATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAG 20618 ||||| || || ||| | | ||| || ||||| || ||||| || | | || Sbjct 2554848 TACTGATGATTCCAAAGCAGTCTGTCAT-CTCAGTGTTAAATTTGGTGCCACACTCAAAA 2554790 Query 20619 CCAGCCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCT 20678 ||||| | || | || ||| ||| | || | | | || || || ||||||| Sbjct 2554789 CCAGCAGGCTGCTTTTGGAATGGGCGAAAGAGCTAAACATTTATGTCATTGGTGTCAGCT 2554730 Query 20679 TCCACGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCA 20738 |||| ||||| |||||||||| ||| | || | | | | |||| ||| ||| Sbjct 2554729 TCCATGTGGGAAGTGGCTGCACTGATCCTGAGACCTTCGTGCAGGCCACCTCTGGTGCCT 2554670 Query 20739 GGAGAGCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGG 20796 | | | || || | || ||||| | || || ||||||| || | ||| |||| Sbjct 2554669 GCTGTGTCCTTTACATGGG--AGCTGAGGTTGGTTTCAACATGTATCTGCTTGATGTTGG 2554612 Query 20797 TGGCGGCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGT 20853 ||| |||||| | |||||| |||| || ||| | |||||||| || | || Sbjct 2554611 TGGTGGCTTT-CTGGGATC--TGAGGATGTGAAGCTGAAATTTGAGGAGATCACCAGTGT 2554555 Query 20854 CATTAACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGA 20913 || ||| | || |||| | | |||| ||| || | ||||| | || | ||| Sbjct 2554554 AATCAACCCAGCACTGGACATGTATTTCCCATCAGACTCAGGAGTGACAGTCATAGCTGA 2554495 Query 20914 ACCTGGCAGGTACTA 20928 || ||||| ||||| Sbjct 2554494 GCCAGGCAGATACTA 2554480 >seq138 Length=3455650 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| |||||||| | || || ||| | ||| |||||||| |||| |||| || Sbjct 2329127 TCCAGCATCTGGGGGCCCACGTGTGACGGCCTCGATCGCATTGTTGAGCGCTGTGGCTTG 2329186 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || ||| | || |||||||||||| | | ||||| |||||||| ||||||| | | | Sbjct 2329187 CCCGAGATGCATGTGGGCGACTGGATGCTCTTTGAGAACATGGGTGCTTACACCGTCGCT 2329246 Query 21242 AGCTCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 | |||| || || ||||| || ||| || | || | | ||||||| || |||| Sbjct 2329247 GCCGCTTCTACTTTCAACGGATT-CCAGAGGCCGACCATCTACTATGTGATGTCAG 2329301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463501731203280