Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5307 131 2e-25 seq717 114 1e-20 seq298 109 5e-19 seq45 102 8e-17 seq73 96.9 3e-15 seq56 96.9 3e-15 seq13 87.8 2e-12 seq265 84.2 2e-11 >seq5307 Length=1324 Score = 131 bits (144), Expect = 2e-25 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || |||| |||||||||||||| ||||| || || | ||| | | | ||||| || Sbjct 934 AAGTGTAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCA-TCCTCCAG 876 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| |||||||| |||| || ||||||||||| || |||||||| |||||||| ||| Sbjct 875 CTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT 816 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| || | ||||| ||||| ||||||| || || | |||| ||| |||| Sbjct 815 -TTTAGCTTTGGCATTCTCAATAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCTTGC 757 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || || || || |||||||| Sbjct 756 CCGTCAGGGTCTTCACAAAGATCTGCAT 729 >seq717 Length=839118 Score = 114 bits (126), Expect = 1e-20 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| ||||| | || | ||| | | | ||||| ||||| ||||| Sbjct 563473 GTGGACTCTTTCTGGATATTACAGTCTGAGAGAGTGCGGCCA-TCCTCCAGCTGTTTGCC 563531 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || |||| || |||||||||| || |||||||| |||||||| ||| ||| || | Sbjct 563532 TGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT-TTTAGCTT 563590 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || || | |||| ||| ||||| ||||| | Sbjct 563591 TGACATTCTCAATAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCTTGCCCGTCAGGG 563650 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 563651 TCTTCACAAAGATCTGCAT 563669 >seq298 Length=2265018 Score = 109 bits (120), Expect = 5e-19 Identities = 145/198 (73%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| ||||| || || | | || | ||||| ||||| |||||| Sbjct 584629 GTGGACTCTTTCTGGATATTCTAGTCAGAGAGTGCGGCCA--TCCTCCAGCTGTTTGCCC 584686 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 | |||| || ||||||||||| || |||||||| |||||||| || ||| || || Sbjct 584687 ACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGA--TTTAGCTTT 584744 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || |||| ||| ||||| ||||| || Sbjct 584745 GACATTCTCAATAGTGTCACTGGGCTCGACCTCAGGTGTGATGGTCTTGCCCGTCAGGGT 584804 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || ||||||| Sbjct 584805 CTTCACAAAGGTCTGCAT 584822 >seq45 Length=5545317 Score = 102 bits (112), Expect = 8e-17 Identities = 147/200 (74%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| ||||| || || | ||| ||| | ||||| ||||| | ||| Sbjct 1737702 GTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGACCA-TCCTCCAGCTGTTGGCC 1737760 Query 133523 CG-CGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | | |||| || | ||||||||| || |||||||| |||||||| ||| ||| ||| Sbjct 1737761 CCACAAAAATCAGACTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT-TTTAGCT 1737819 Query 133582 T-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | || | |||| ||||| | ||| || |||| |||| ||| ||||| ||||| Sbjct 1737820 TTGACATTCTCAGTGGTGTCAG---GCTTGACCTCGAGTGTGATGGTCTTGCCTGTCAGG 1737876 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || ||||||||||| Sbjct 1737877 GTCTTCACAAAAATCTGCAT 1737896 >seq73 Length=4601553 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| |||||||| || | | | | ||||| ||||| ||||| Sbjct 4090070 GTGGACTCTTTCTGGATATTGTA--GGCTGAGAGAGTCC--ATCCTCCAGCTGTTTGCCA 4090015 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 | |||| || || ||||||| || |||||||| |||||||| ||| ||| || || Sbjct 4090014 ACAAAAATCAGATGCAGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT-TTTAGCTTT 4089956 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| ||||||| || |||| |||| ||| ||||| ||||| || Sbjct 4089955 GACATTCTTAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTCTTGCCCGTCAGGGT 4089896 Query 133643 TTTTACGAAAATCTGCAT 133660 | || || |||||||| Sbjct 4089895 CTACACAAAGATCTGCAT 4089878 >seq56 Length=5443799 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/211 (71%), Gaps = 14/211 (7%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||||||||||| ||||| || || || || ||||| || Sbjct 2722513 AAGTGCAGGGTGGACTCTTTCTAGATATTATAGTC--------TGAGAGATATCCTCCAG 2722564 Query 133514 CTGCTTGCCCGCGTAAATGA---GCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGT 133570 ||| ||||| || |||| | || |||||||||| || || ||||| |||||||| Sbjct 2722565 CTGTTTGCCTGCAAAAATCAGATGCTGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTG 2722624 Query 133571 GATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTT 133629 ||| ||| |||| | | | ||| | ||||| ||||||| || || | |||| ||| | Sbjct 2722625 GAT-TTTAGCTTTAACATTCTCCATGGTGTCACTGGGCTCAACCTCCAGTGTGATGGTCT 2722683 Query 133630 TGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||| || || || ||| |||| Sbjct 2722684 TGCCCGTCAGAGTCTTCACAAAGATCCGCAT 2722714 >seq13 Length=8615514 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATC-GCCCATCGTGGACGAGTCCTCGAG 133513 || || | ||||||||||||| | ||||| || || | | ||| | |||| || Sbjct 1044043 AAGTGCAGGGTGGACTCTTTCAGGATATTATAGTCTGAGAAGAGTGCAGCCATCCTACAG 1044102 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||||| || | || || |||||||||| | ||| |||| |||||||| ||| Sbjct 1044103 CTATTTGCCTGCCAATATCAGGTGCTGCTGGTCAGATGGGGTGCC-TCCTTGTCTTGGAT 1044161 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | ||||| ||||| ||||||| || || | |||| ||| |||| Sbjct 1044162 -TTTAGCTTTGACATTCTCAATAGTGTCCCTGGGCTCAACCTCAAGTGTGATGGTCTTGC 1044220 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGC 133658 | ||||| || || || || |||||| Sbjct 1044221 CCGTCAGGGTCTTCACAAAGATCTGC 1044246 >seq265 Length=2261556 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || ||||| || || || | | | || || || |||||||| Sbjct 841112 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTGCC 841054 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | | ||||| || ||||| || |||||||| || |||||| ||| Sbjct 841053 AGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 840994 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | ||| || || |||| ||||| ||| || ||||| || || Sbjct 840993 TACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCGGTAAGGGT 840934 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 840933 TTTCACGAAAATCTGCAT 840916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483375050264040