Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq125 262 5e-65 seq177 188 8e-43 >seq125 Length=3779757 Score = 262 bits (290), Expect = 5e-65 Identities = 622/933 (67%), Gaps = 19/933 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| || Sbjct 18650 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCTG 18591 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||| ||| ||| | | || ||||| || | || || | Sbjct 18590 TGTCAAACTTATTGGCAAACAAGTGGTGCATGCGC---AACATCCAGTTCAAGTCACCTG 18534 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || || |||||||| ||||| || |||||| |||| ||||| || |||| || | Sbjct 18533 CTCCAAAAACACACACGGAGCGCACATGGACGCCGTTGCAGGGCGGGTAGGGGGCGCCCT 18474 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || || |||| |||||||| || ||||||| || || |||||||||| Sbjct 18473 TGGAAACATCACCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCGG 18414 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||| ||||| | || | || || | ||| || || | || | ||||| | | Sbjct 18413 ACATGTCATACTTATGG-CTTAGGGACAGTGATCCTGGGACTTCAGGGATCCTCTGAATA 18355 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || ||||| || || || || || | ||||||||| |||| | Sbjct 18354 GTGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGG 18295 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| || | ||| | ||| || || ||| | || | ||| || || || Sbjct 18294 ATTTTTTCATTCTCTAGCACGTACTCCACATATTTCCTACTGACCACAAAATAGGCACTG 18235 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| ||| | | |||||| | |||||| || ||||| | | Sbjct 18234 CCTGAAAACAGAGGTGTTTCAAGAGGAGGCTGTAGTTTGTCAGTCCCTGTGTTTGTCAGC 18175 Query 162538 ATTCCCTCTACGACCACGTGTCTC----TTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 |||| | || || ||| | || ||||||| | | ||| ||| | | Sbjct 18174 TTTCCATTAACAAC----TGTATAATGTTTTTTCCACCTTTCTTTTTTATTGGATGGCAT 18119 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | || || || ||| |||| ||| | | ||| || | | || || || || Sbjct 18118 TTTCTCAGTTTCGAGATTGTTTTCTCCCATTAGTGACTTGAGTTTCCTGACAATTTCCAG 18059 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| ||||| || | ||||| ||||| || | || ||||| | | || Sbjct 18058 GTTGGTTTTAATAGGAAAATCCATACCGCAAAGATTTATCAAGTACTTCCAATCTGCACT 17999 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | || ||| || ||||| | |||||| ||||| ||||| || ||||||||||| || || Sbjct 17998 CATTCTGTAGAGGTCCTGCATACAGTTGAGATCAGCCTGAACCCGACTCCACGATGCATA 17939 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 ||| ||| |||||| | | |||| ||||||||||| |||||| || | || || || Sbjct 17938 CACCACGGTCTCCAGCTGACTGGCCACAAAGACATTACTGAAACAGGATGCAATGCCAAT 17879 Query 162834 CACGGCCAGTGAGAA---CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 ||| | ||| | || ||| || | ||| | || || || | ||| || | ||| Sbjct 17878 CACTG-CAGCCAAAAAGGAATC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATT 17822 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 |||||| |||||||||| ||| | || || ||||| || ||||| || || ||||| Sbjct 17821 CTGAGGCATATAGATGGCCCGCAGGAGCCTGTCAAACATTTCAATCTTGTGATGAACCAC 17762 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| ||||| || |||| ||||| || Sbjct 17761 TATGGAATATGCTATTGGAAACTTTGCCTCTTC 17729 >seq177 Length=2932736 Score = 188 bits (208), Expect = 8e-43 Identities = 235/322 (73%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || | || ||||| ||||| ||||| || | | Sbjct 2837910 CAAAGAGAGTGAGGCAGGCTATTCCTGAGACCTTCCCGGAACCAAAGGTATTGAAGAGGC 2837969 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || || |||| || || ||||||| |||||||||||| || || | || || || || Sbjct 2837970 ACTTATAACACCCCTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTGGA 2838029 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || ||||| | | |||||| || | || |||||| ||||| || || Sbjct 2838030 GTCCCAGCTCAGTGATGTTGATCTTGTCCTTATAGGCAGCCTGGACCACAACCCCATGGG 2838089 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| || |||||||||| ||||| | |||||| || |||||||| || || | Sbjct 2838090 TCTTGCTGAAGGTCACCATGTTTTCTGGGCTTGCAGCCTTGATTTTCTGCCATGTCACAA 2838149 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 || ||||| | | |||| |||||||||| ||| |||||||||||||||| | | Sbjct 2838150 CCAAGACTTCCTGGGAAGTTTCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCT 2838209 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 |||| ||||| || ||||| Sbjct 2838210 TTTTTTCATCTTGGGTCACCAC 2838231 Score = 127 bits (140), Expect = 2e-24 Identities = 180/251 (72%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| |||| || || |||||||||| ||| | || | ||| |||||||||| Sbjct 2836704 ACAGTTTGCCTGAAGTTGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT-- 2836761 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 ||||||| ||||| || || ||||| || || || | || | |||||||| ||||| Sbjct 2836762 -TTCCCACCTGACTCTTGGGGTCTTTGACATGGAGGACACTGATGACAGATGTGGTCCCA 2836820 Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | ||| |||| | | ||||| || || ||||| ||||| | ||| ||||| Sbjct 2836821 TTGGGGTGTGAGAGAA---TCTCTGTACTGTTGTCCATTCCTGATCCAGAAACCTTCCAG 2836877 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739 | || |||| ||||| | || | ||||||||||| || |||| ||||| ||| Sbjct 2836878 GAGATCGCAGGTGCTGGGCGGGCGTTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAG 2836937 Query 171740 AACTCATAGTG 171750 || | |||||| Sbjct 2836938 AATTTATAGTG 2836948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578377258641600