Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq177 269 3e-67 seq612 145 9e-30 seq827 138 1e-27 seq19 127 2e-24 >seq177 Length=2932736 Score = 269 bits (298), Expect = 3e-67 Identities = 251/319 (79%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| ||||| | |||||||||||| || || ||| | |||||| ||| Sbjct 2838231 GTGGTGACCCAAGATGAAAAAAAGCTGCTGAACACACCTGCTTCCTTACGATGCTCTCTG 2838172 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | ||||| ||||| || || |||| || ||||||||||||||| | | | ||||| Sbjct 2838171 GAAACTTCCCAGGAAGTCTTGGTTGTGACATGGCAGAAAATCAAGGCTGCAAGCCCAGAA 2838112 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| ||| ||||| ||||||||| | || |||||||||||| Sbjct 2838111 AACATGGTGACCTTCAGCAAGACCCATGGGGTTGTGGTCCAGGCTGCCTATAAGGACAAG 2838052 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 || |||||||| |||| |||||||| ||||||||||| || || ||||| |||||| | Sbjct 2838051 ATCAACATCACTGAGCTGGGACTCCAGAACTCAACCATTACCTTCTGGAACACCACCCTG 2837992 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||||||| || || |||||||| || |||||||| || ||||| |||| || Sbjct 2837991 GAGGATGAGGGGTGTTATAAGTGCCTCTTCAATACCTTTGGTTCCGGGAAGGTCTCAGGA 2837932 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 2837931 ATAGCCTGCCTCACTCTCT 2837913 Score = 248 bits (274), Expect = 1e-60 Identities = 221/277 (80%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || |||||||| ||||| |||||||| || ||||| || Sbjct 2836969 GTACAGCCCACAGTATTCCTCCACTATAAATTCTTTGAAGACCACCTAAATATCACTTGC 2836910 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 |||||||| |||||||| ||||| ||| | |||||| |||| || |||| ||| || Sbjct 2836909 TCTGCCAACGCCCGCCCAGCACCTGCGATCTCCTGGAAGGTTTCTGGATCAGGAATGGAC 2836850 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| |||| || || | ||||| || || ||||| | |||||| ||||| Sbjct 2836849 AACAGTACAGAGATTCTCTCACACCCCAATGGGACCACATCTGTCATCAGTGTCCTCCAT 2836790 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || |||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||| Sbjct 2836789 GTCAAAGACCCCAAGAGTCAGGTGGGAAAGGAGGTGATCTGCCAGGTGCTGCACCTGGGG 2836730 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || ||||| ||| ||||||| | ||| |||| Sbjct 2836729 ACTGTGACCAACTTCAGGCAAACTGTGAACAAAGGTA 2836693 >seq612 Length=937308 Score = 145 bits (160), Expect = 9e-30 Identities = 405/612 (66%), Gaps = 11/612 (2%) Strand=Plus/Plus Query 146909 GCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCA 146968 |||| |||||||| ||||| | | || ||||| | ||| || || | || ||||| | Sbjct 700468 GCTGCATTTTCAGTGGCTCAATGCAATTCAGGTAAATGTGTGCATCTCTCAAAGTGTGTA 700527 Query 146969 CAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGC 147028 | |||| || |||| ||| | || | | || |||| |||||||||||| ||||||| Sbjct 700528 CCAAGTTACCTTGCTTCAGGTCCGTGATAAGTGCAACCACGTAGGTGAGCAGGGAGTAGC 700587 Query 147029 TGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCT--GGCA 147086 |||| |||||||| || || | ||||||| ||| | ||||||| | | | | || Sbjct 700588 TGGCAATGTTGAATGGCACACATAGGCCCACGTCGGCTGACCTCTAGAAGGGTTTCTTCA 700647 Query 147087 CGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 | | ||||| | || ||||||| |||||||| ||| |||||| | || || |||| Sbjct 700648 CAACAGCTCACTGTTCACCACGTAGAACTGGCAAAGGGCATGGCACAGAGGAAGTTCCAT 700707 Query 147147 GGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCT 147206 | || || || || || || | | | | ||| || ||||| | Sbjct 700708 GAGAAAAAGATCTTTTGGATTTCAAGCGCACAGGGTGATTCCTCTGTCATCAGGGTTGGT 700767 Query 147207 CTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCC 147266 || || || | ||| ||| ||||| || || || || | || | || | Sbjct 700768 TTTGATAGTGTCAGTCACCTTTTGCAGTTGGTCTACTCCTTGACCTGCATAATCTGAATC 700827 Query 147267 GCAGTCCACGTA-CCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGT 147325 || ||| ||| ||| ||| |||||||||| ||||| || ||||| || | | Sbjct 700828 CATTTCTTTGTATTCTGTCCCAAAA--GCCTCCACTGAAAGCCATAAACTGGGCCTACAT 700885 Query 147326 CGCCGGGCTTTCTGTGCGAGAAGC-CCGCCCGCTTGAGA-AACTCGGGGGACCCGTGGGC 147383 | || |||| ||| || ||| |||| ||| | | || || ||||||| || ||| Sbjct 700886 CCCC--TTCTTCTCTGC-AGGAGCATCGCCGGCTATACAGAAGTCTGGGGACCTGTTGGC 700942 Query 147384 GTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAA 147443 | |||||| | ||||||||||| | || || |||| ||||| ||| ||| || Sbjct 700943 ATGCCAGATTCTCACTCCCTTGGACCACAGGTCTTTAGCACTTGTGGATCCCTTGATAAA 701002 Query 147444 CCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAA 147503 ||| | || |||||||||||| || |||| || || | | ||| ||||| || || || Sbjct 701003 CCACAACAACTCCTCCAAAACAACCTTCCAGAATACACATTGGGTTGTCAG-AGAGGAAA 701061 Query 147504 CTGGTCCCTCAG 147515 | || ||||| Sbjct 701062 TTCATCTCTCAG 701073 >seq827 Length=831450 Score = 138 bits (152), Expect = 1e-27 Identities = 131/170 (77%), Gaps = 12/170 (7%) Strand=Plus/Minus Query 178228 TTAAGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGG 178287 || |||||||| |||||||||| |||||||| |||||||| |||||||||||||| |||| Sbjct 170817 TTTAGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAAGAGG 170758 Query 178288 TGATGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAA 178347 ||||||| |||| |||| || ||||| ||||| |||||||| || | Sbjct 170757 TGATGCCCAAGGCTGAGAGCCA------------GGGCCCAGACATCAAGGAGCACGTGA 170710 Query 178348 ACTCTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 |||| || ||||||||||| ||||| || || | |||| ||||| ||| Sbjct 170709 ACTCCCTCGGGGAAAAGCTGAAGACACTCAGGCTCCGGCTCCGGCGCTGT 170660 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| ||||||||||| ||||| || || ||||||| Sbjct 168559 AGCTCCAAGACAAAGGGGTCTACAAAGCCATGAGTGAGTTCGATATCTTCATCAACTACA 168500 Query 178522 TAGAAGCTTACATGACAA 178539 |||||| ||| |||||| Sbjct 168499 TAGAAGACTACCTGACAA 168482 >seq19 Length=7530758 Score = 127 bits (140), Expect = 2e-24 Identities = 539/836 (64%), Gaps = 39/836 (5%) Strand=Plus/Minus Query 8617 CTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATAAAGTAC 8676 ||||||||| |||| || | ||||||| |||||| | | |||||| ||| ||| Sbjct 3690543 CTGGTGTTTGGAGTTGGTCTCCTGGGCAATGTGCTGGTGGTGGTGATCCTCAAAAAATAC 3690484 Query 8677 AAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGACCTGCTG 8736 | | | || | || ||||||||||||| |||| |||| |||| || |||| ||||| Sbjct 3690483 AGGCGCCTGCGCATTATGACCAACATCTACCTGCTCAATTTGGCGATTTCTGACTTGCTG 3690424 Query 8737 CTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGGGTGGGAC 8796 | | ||||||||||||| |||||||||| || || |||| || ||||| Sbjct 3690423 TTTCTAGTCACCCTCCCCTTCTGGATTCACT--ATATCAGGTGGAA----TGAGTGGGTG 3690370 Query 8797 GCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTACAGCGAA 8856 | ||| | |||||||||||| | ||| || | || | | ||||||| || Sbjct 3690369 TTTGGCCATCGCATGTGTAAGTTGCTCTCGGGGCTGTATTACATAGGCTTGTACAGTGAG 3690310 Query 8857 GTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGCGGTGGCT 8916 || | || ||||||||| |||| | |||||||| || || |||| |||| ||| | Sbjct 3690309 ATCTTTTTCATCATCCTGCTGACCATCGACAGGTACCTGGCCATTGTCCACGCTGTG--T 3690252 Query 8917 TACAG--GCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTGGATTC 8974 | | || || ||| || | || || ||| | ||| || | ||||| | Sbjct 3690251 TCGCGCTGCGGGCCCGGACTGTCACCATTGGGATCATAAGCAGTGTCTTCACCTGGGCCC 3690192 Query 8975 TGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTAT-GAATCCAATA--ATGC--CAC 9029 |||| | | ||| || | || || |||||||| || | ||||| | || | || Sbjct 3690191 TGGCAGGGCTGGCTGCCCTCCCCGAATTTATCTTCCATAGGTTCCAAGAGGATTCTGAAC 3690132 Query 9030 AGG--CAAGGGGGTC-----TGCCAAGCCTCCTACACAGACTTTTGGAAGGGGGTTGATG 9082 ||| | | ||| | | || | |||| |||||| | | ||| Sbjct 3690131 AGGTTCTCTGCAGTCCACTTTATCCAGAGGATGAAGAAGACACCTGGAAGCGTTTCTATG 3690072 Query 9083 TTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCTGCTA-- 9140 | || |||| | | ||| | |||||| |||| || ||||| ||||||| Sbjct 3690071 CTGTGAGAATGAATGTCTTGGGTCTCGTTCTGCCTCTGCTCATTATGGCTGTCTGCTATG 3690012 Query 9141 CTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCT-GCACGCC 9198 | || |||||| || || ||| | |||| || || || ||| | | ||| Sbjct 3690011 CCGG--AATCATTAAAACGCTGGTCAGATGCCC-CA----GTAGAAAAAAGTATAAGGCC 3689959 Query 9199 GTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAACGTC 9258 | ||||||||| |||| ||||| | | ||| | || ||| || |||||| | Sbjct 3689958 ATTCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGGGACCTTACAACCTG 3689899 Query 9259 CTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCGCGGCGC 9318 | ||| || | | | || ||| | | | |||| | | |||||||| |||| || Sbjct 3689898 GTTCTCCTTCTCTCCGCTTATCAAACGATCTTCTTTGAGGCTGACTGTGA---GCGGAGC 3689842 Query 9319 A---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTC 9375 | | ||||| ||||| | ||||| | ||| ||||||||| ||| |||||||| ||| Sbjct 3689841 AAACAGCTGGACGTGGCCATGCTGGTGACGGAGGTGATCGCCTACACGCACTGCTGTGTC 3689782 Query 9376 AACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCAGGACTT 9431 || || || |||||||| ||||| || || | ||||| || |||| || |||| Sbjct 3689781 AATCCTGTGATCTACGCCTTTGTTGGAGAGAGGTTCCGGGAGCACCTCCACCACTT 3689726 Score = 102 bits (112), Expect = 1e-16 Identities = 212/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 8603 CCCTGTGGTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAG 8662 ||| || ||| || ||||| ||| | |||| || | ||||| ||||||| |||| | Sbjct 3724861 CCCCGTTGTATTCCCTGGTATTTATCATTGGCCTGGTCGGCAACATCCTGGTGGTCCTGG 3724920 Query 8663 TCCTCATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCC 8722 |||| | | | |||||||||| || |||||||| | ||| ||| ||||||||||| Sbjct 3724921 TCCTTGTGCAAAAGAAGAGGCTCAAGAGCATGACCAGCGTCTACCTCCTCAACCTGGCCA 3724980 Query 8723 TTGGTGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAA 8782 | |||||| | | | ||||| || ||||| ||||| || | || || | |||| Sbjct 3724981 TCTCGGACCTGATCTTCCTCTTCACGCTGCCCTTCTGGATCGAC-TACAATC-TGAGGAA 3725038 Query 8783 CTGGTGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGG 8842 | ||| | || ||| || |||||||||| | ||| || | || | | Sbjct 3725039 CAACTGGAT-ATTCGGTGACAGCC---TGTGTAAGTTGCTCTCGGGGCTGTATTACATAG 3725094 Query 8843 CACTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTG 8902 |||||||||| || | || ||||||||| |||| | |||||||| || || ||| Sbjct 3725095 GTTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACCATCGACAGGTACCTGGCCATTG 3725154 Query 8903 TGTACGCGGTG 8913 | |||| ||| Sbjct 3725155 TCCACGCTGTG 3725165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583432780154400