Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_027298.1 Length=36814 Score E Sequences producing significant alignments: (Bits) Value seq5790 107 5e-19 >seq5790 Length=1233 Score = 107 bits (118), Expect = 5e-19 Identities = 226/327 (69%), Gaps = 20/327 (6%) Strand=Plus/Plus Query 14128 CGGAACAGCAGAACGACCCAGTCCAGGGCGAGAACGCCCCGTTCGCCGCCTGCATCACGT 14187 ||||| | |||||| ||| || || || ||| ||||||| || | ||| ||| Sbjct 832 CGGAATACCAGAACAGCCCGATCGCGGCCGGTAAC---CCGTTCG--GCAAG-ATCTCGT 885 Query 14188 TCTGGGTCAACCGCCTGGCGCAGTGGATGT--TCTA---CGGCGCGTGTGACCCGTCCCT 14242 |||||||| | | | |||| | |||| | |||| ||| ||| || ||||| || Sbjct 886 TCTGGGTCGA--GAC--GCGCCG-GGATCTCGTCTATTTCGGGGCGATCGATCCGTCGCT 940 Query 14243 TGGCAAGCAAGGTTCCAG--CCGCGACCCCAGCGCCATCCTGGTGGGTGGGTTCAATCGG 14300 || |||| || | || ||| ||||| |||||||||| | |||||| | | ||| Sbjct 941 CGGAAAGC--GGAACAAGAGCCGTGACCCATCCGCCATCCTGATCGGTGGGATGGACCGG 998 Query 14301 GAAACAGGCGTCCTGGACGTGGTCGAGGCCGGTATCCGCAAGCGCCTGCCGGACAAGATC 14360 || ||| |||||||||||||||| |||||| || |||||||||| |||| Sbjct 999 CTGACCGGCAAGATGGACGTGGTCGAGGCATCAATCCGCCGCCGTCTGCCGGACATGATC 1058 Query 14361 ATCGAGGACATCATCGCCATGCAGCGGGCCTATCGCTGCCTGGTCTGGGGCGTTGAGGCG 14420 |||| ||| | |||||| | ||||| | ||||| || || | ||| ||| || Sbjct 1059 ATCGCGGATACCATCGCGCTTCAGCGAGAGTATCGGTGTCTCTTGTGGTTCGTGGAAAGC 1118 Query 14421 GTCCAGTTCCAGGAGTTCCTGCGCACC 14447 ||||||||||||| |||||| | ||| Sbjct 1119 ATCCAGTTCCAGGAATTCCTGAGGACC 1145 Score = 104 bits (114), Expect = 5e-18 Identities = 174/250 (70%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 13527 GAGGCGATCAAGGCGGAGCTGGAGTTCAACCCGCGCCT--GGCCATGGACTTCCCCCAGG 13584 ||||| || ||||| |||||| ||||||||| || || | ||| ||||| | | Sbjct 302 GAGGCCATTAAGGCCGAGCTGACCAACAACCCGCGGCTTCGGTC--GGATTTCCCGGATG 359 Query 13585 GCGCCGGCAAGGGCCGCGTCTGGCAAGTCGGCACCATCGTTACGGCGAACGATGCCAAGG 13644 ||||||||| || ||||||| | ||| || |||| | | | | | | Sbjct 360 CGTGCGGCAAGGGGCGGGTCTGGCGCGAAGGCCAGATTATTACCCGTACCAACGTAATGA 419 Query 13645 TCCAGGTCTTCGGCTCCGGCAAGCGGATGCGCGGTCTTCGACACGGCCCGCATCGTCCTG 13704 ||| || | ||||| ||||| || | ||||||| | |||||||| || | || || | Sbjct 420 TCCTGGGCCTCGGCGCCGGCCAGAAGGTGCGCGGCTTGCGACACGGTCCATACCGACCCG 479 Query 13705 ACCTGGTGATCGGCGACGACCTGGAGAACGACGAGAACGTCCGCAGCCCGGAGCAGCGCG 13764 |||| ||||| ||||||||||||||||||||| |||||| ||||| ||||| | Sbjct 480 ACCTTCTGATCTTCGACGACCTGGAGAACGACGAAGCTGTCCGCGTGCCGGATCAGCGGG 539 Query 13765 ACAAGCTGGA 13774 |||| |||| Sbjct 540 ACAAATTGGA 549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117672619618352