Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_027298.1
Length=36814
Score E
Sequences producing significant alignments: (Bits) Value
seq5790 107 5e-19
>seq5790
Length=1233
Score = 107 bits (118), Expect = 5e-19
Identities = 226/327 (69%), Gaps = 20/327 (6%)
Strand=Plus/Plus
Query 14128 CGGAACAGCAGAACGACCCAGTCCAGGGCGAGAACGCCCCGTTCGCCGCCTGCATCACGT 14187
||||| | |||||| ||| || || || ||| ||||||| || | ||| |||
Sbjct 832 CGGAATACCAGAACAGCCCGATCGCGGCCGGTAAC---CCGTTCG--GCAAG-ATCTCGT 885
Query 14188 TCTGGGTCAACCGCCTGGCGCAGTGGATGT--TCTA---CGGCGCGTGTGACCCGTCCCT 14242
|||||||| | | | |||| | |||| | |||| ||| ||| || ||||| ||
Sbjct 886 TCTGGGTCGA--GAC--GCGCCG-GGATCTCGTCTATTTCGGGGCGATCGATCCGTCGCT 940
Query 14243 TGGCAAGCAAGGTTCCAG--CCGCGACCCCAGCGCCATCCTGGTGGGTGGGTTCAATCGG 14300
|| |||| || | || ||| ||||| |||||||||| | |||||| | | |||
Sbjct 941 CGGAAAGC--GGAACAAGAGCCGTGACCCATCCGCCATCCTGATCGGTGGGATGGACCGG 998
Query 14301 GAAACAGGCGTCCTGGACGTGGTCGAGGCCGGTATCCGCAAGCGCCTGCCGGACAAGATC 14360
|| ||| |||||||||||||||| |||||| || |||||||||| ||||
Sbjct 999 CTGACCGGCAAGATGGACGTGGTCGAGGCATCAATCCGCCGCCGTCTGCCGGACATGATC 1058
Query 14361 ATCGAGGACATCATCGCCATGCAGCGGGCCTATCGCTGCCTGGTCTGGGGCGTTGAGGCG 14420
|||| ||| | |||||| | ||||| | ||||| || || | ||| ||| ||
Sbjct 1059 ATCGCGGATACCATCGCGCTTCAGCGAGAGTATCGGTGTCTCTTGTGGTTCGTGGAAAGC 1118
Query 14421 GTCCAGTTCCAGGAGTTCCTGCGCACC 14447
||||||||||||| |||||| | |||
Sbjct 1119 ATCCAGTTCCAGGAATTCCTGAGGACC 1145
Score = 104 bits (114), Expect = 5e-18
Identities = 174/250 (70%), Gaps = 4/250 (2%)
Strand=Plus/Plus
Query 13527 GAGGCGATCAAGGCGGAGCTGGAGTTCAACCCGCGCCT--GGCCATGGACTTCCCCCAGG 13584
||||| || ||||| |||||| ||||||||| || || | ||| ||||| | |
Sbjct 302 GAGGCCATTAAGGCCGAGCTGACCAACAACCCGCGGCTTCGGTC--GGATTTCCCGGATG 359
Query 13585 GCGCCGGCAAGGGCCGCGTCTGGCAAGTCGGCACCATCGTTACGGCGAACGATGCCAAGG 13644
||||||||| || ||||||| | ||| || |||| | | | | | |
Sbjct 360 CGTGCGGCAAGGGGCGGGTCTGGCGCGAAGGCCAGATTATTACCCGTACCAACGTAATGA 419
Query 13645 TCCAGGTCTTCGGCTCCGGCAAGCGGATGCGCGGTCTTCGACACGGCCCGCATCGTCCTG 13704
||| || | ||||| ||||| || | ||||||| | |||||||| || | || || |
Sbjct 420 TCCTGGGCCTCGGCGCCGGCCAGAAGGTGCGCGGCTTGCGACACGGTCCATACCGACCCG 479
Query 13705 ACCTGGTGATCGGCGACGACCTGGAGAACGACGAGAACGTCCGCAGCCCGGAGCAGCGCG 13764
|||| ||||| ||||||||||||||||||||| |||||| ||||| ||||| |
Sbjct 480 ACCTTCTGATCTTCGACGACCTGGAGAACGACGAAGCTGTCCGCGTGCCGGATCAGCGGG 539
Query 13765 ACAAGCTGGA 13774
|||| ||||
Sbjct 540 ACAAATTGGA 549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 117672619618352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |