Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq927 351 8e-92 seq67 100 2e-16 seq154 96.9 3e-15 seq138 93.3 3e-14 seq861 89.7 4e-13 >seq927 Length=612318 Score = 351 bits (388), Expect = 8e-92 Identities = 652/944 (69%), Gaps = 26/944 (3%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||||| ||||| || |||| ||||| || ||||| ||||| || ||||| |||| Sbjct 154496 TTTGTCGTCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCGGAGGCT 154437 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || ||||||||||| || ||||| ||| | | || ||| | ||||| ||| || Sbjct 154436 TCCTTTTGGACAGCTGAGGAAGTGGATCTCTCCAAGGACCTCCAGCAC--TGGGAAGCCC 154379 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | || || | || | | |||||||||| ||| | || || ||||||||||| || | Sbjct 154378 TGAAGCCTGATGAGAGATATTTTATATCCCATGTTCTTGCTTTCTTTGCTGCGAGTGATG 154319 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 | |||||||||||||| ||||| |||||| |||||| |||| ||||| |||||| Sbjct 154318 GCATAGTCAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAATTCAGATTAC-AGAAGCC 154260 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || ||||| ||||| || ||||||||||| | ||| | ||||| || ||||| ||||| Sbjct 154259 CGCTGTTTCTATGGCTTCCAAATTGCCAT-GGAAACAAACATTCTGAGATGTATAGTCTC 154201 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA 44056 || | || ||||| || |||||| | || | | | | | || || || || || Sbjct 154200 CTCAATGACACGTATATTAAAGATTCCAAGGAAAGGGAGTGTCTCTTCAACGCCATTGAG 154141 Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAAT 44113 ||| | ||| | || | || ||||| |||||| | ||||| | | | Sbjct 154140 ACAATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGTTGGATTGGGGACAAAGAG 154081 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | | | | ||||||||| |||| || ||||| | |||||||| || |||||||| || Sbjct 154080 GCTACCTATGGAGAACGTGTTGTAGCTTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGT 154021 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || ||||| | ||||| ||| | |||||| |||| ||||| |||| | || ||||| Sbjct 154020 TCTTTTGCATCGATATTCTGGCTCAAGAAATGAGGACTGATGTCTGGCCTCACATTTTCC 153961 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGA 44293 || || | || || | ||||| || ||||| || || ||||| ||| || | | | Sbjct 153960 AACGAACTTATTAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAA 153901 Query 44294 TATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 | || || || | || ||||| ||| | | | ||| || |||| | || ||| Sbjct 153900 CACCT--GATAC-ACAAACCTTCGGAGCAGAAAGTCAAAGAAATAATTGTCAATGCTGTA 153844 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGA 44412 | ||||||||| || || | ||| ||||| || || || | || || ||||| || Sbjct 153843 AGGATAGAACAGGAGTTCCTCACAGAGGCATTGCCGGTGAAGCTCATTGGGATGAATTGC 153784 Query 44413 ACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTG 44472 || ||| ||||| || | ||||||| | ||||| | | | |||| ||||||| Sbjct 153783 AC-TTTAATGAAGCAGTGCATTGAATTTGTGGCAGACAGACTTATGCTGGAGCTGGGTT- 153726 Query 44473 CGATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGG 44528 | | || || || ||| ||||||| ||||| || ||||| |||||||| ||| Sbjct 153725 ---TTAGCAAGATTTTCAGAGTAGAAAACCCATTTGACTTCATGGAGAATATTTCACTGG 153669 Query 44529 AAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGA 44588 |||| || || ||||| ||||| || | || ||||| |||||| |||| || || ||| Sbjct 153668 AAGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGAGAGTATCAGAGAATAGGAGTGATGT 153609 Query 44589 TAA---CAAGTGACAATAAATTTACTACGGATGAAGATTTCTAA 44629 || ||| || ||| ||||| ||||| || |||||| Sbjct 153608 CAAGTCCAACAGAGAATTCTTTTACCTTGGATGCTGACTTCTAA 153565 >seq67 Length=4940759 Score = 100 bits (110), Expect = 2e-16 Identities = 170/239 (71%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||| | || ||| | || ||||||||||| ||| | ||| | || ||| | | Sbjct 3063490 CAGTGGTTTCAGCAGTGTGCTACAGTTTTTAGGACTATATAAGAAAACTGGCAAATTGGT 3063549 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAA--AT-ACAA 47316 |||||| | || || ||||| |||||| | | || |||||||| | || ||| Sbjct 3063550 ATTTCTTGCATTGGATAATGCTGGAAAATAAT-ACTGCTACACATGCTACATGATGACAG 3063608 Query 47317 TTGCATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGG 47376 || || | | ||| ||| | |||||||| ||||| ||| ||||||| |||||||| Sbjct 3063609 --GCTTGGACAA-CATGTCCCAATGTTACATCCCACCTCAGAAGAACTAACCATTGCTGG 3063665 Query 47377 CATAACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAA 47435 ||| || || | || |||||| | || ||||| ||||||| || ||| | ||| ||| Sbjct 3063666 CATGACCTTCACAACTTTTGATCTGGGTGGACATGTTCAAGCTCGAAGAGTATGGAAAA 3063724 >seq154 Length=3096186 Score = 96.9 bits (106), Expect = 3e-15 Identities = 295/450 (66%), Gaps = 12/450 (3%) Strand=Plus/Plus Query 77243 GCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTGGG 77302 ||||| |||| || |||| ||| || ||||| |||||| |||||| || || || Sbjct 2324524 GCTCCTTCTCTCGCTAGCCTGTCAGCTTCCTCGTTGCCTACAAATCCTGAATGGCCAGGA 2324583 Query 77303 ATGTGCAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCC 77362 | |||| ||| | |||| || ||||| |||||| || ||||| || Sbjct 2324584 ACATGCATCCACTGGATGTCCATGCCCTGGACGAGTTTCTCCAGCCCCACGAAGTCCTCT 2324643 Query 77363 TTGTTGA-CAACTGACCCTCC--GC-CATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTT 77418 ||||||| || || || ||| || | || ||||| || |||| |||||| | Sbjct 2324644 TTGTTGATCACCT--CCTTCCCGGCGCTTGTT--CTCCACCCATTCTTCTTCCAACCTTG 2324699 Query 77419 AACCCACTTAGTCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTT 77478 |||||| || || | || |||||||| ||||| ||||||||||| | ||||||||||| Sbjct 2324700 AACCCAGTTGGTGATCCCGTTGATGGTAAACATACTGTCTGTGTATAGAACCAGCTTCTT 2324759 Query 77479 GATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCGCGCTG 77538 ||| || | || || |||| | |||| ||||| || ||||| || || Sbjct 2324760 GATGTTTTGAGCCCTTGCCTGTTCGATGGCTT----TGCAGGATGAATTTCTGCTGTTTG 2324815 Query 77539 GTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAGCGGGTGATTATAACCCCAATA 77598 ||| || ||| |||| ||||| | | || || || || ||||| || Sbjct 2324816 GTTGGTTTGTCGCCCAGGAAGTCTAATACCTATGTTTAGAGGATGGCCGGGGCCCCAGTA 2324875 Query 77599 TACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGATAAGCAACAGCCGTCAGTGTA 77658 || || || || ||||| || || | || || |||| ||||| |||||||| Sbjct 2324876 AACACCGATTCCTGCTCGCGCCCTCCTCCGCCCATTACTGCAGCAGCAGCCATCAGTGTA 2324935 Query 77659 GACCACCACGGCGTCACCCATGTACGTGAA 77688 ||| || || || |||||||| | ||| Sbjct 2324936 GACGACGACATATTCTCCCATGTAAGAGAA 2324965 >seq138 Length=3455650 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||| | |||||||| || |||||||| || || ||||| Sbjct 2542925 GGAGAACGTGTTGTGGCTTTTGCCGCAGTGGAAGGAATCTTCTTTTCCGGTTCTTTTGCA 2542866 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| || || | Sbjct 2542865 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAACGAACTT 2542806 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 2542805 ATTAGCAGAGATGA 2542792 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| |||||| |||| ||||| |||||| || || || ||||| || |||||||| Sbjct 2544577 CGGTTTAGCCAAGAAATTCAGATTAC-AGAAGCCCGCTGCTTCTATGGCTTCCAAATTGC 2544519 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| || ||||| ||||| || || || || || || |||||| Sbjct 2544518 CATGGAAAACATACATTCTGAGATGTATAGTCTCCTCATTGACACTTATATTAAAGAT 2544461 >seq861 Length=819057 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 784379 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 784438 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 784439 AACGAGTTTCAGAGTATCAGCG 784460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397419326113855