Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5307 95.1 1e-14 seq717 82.4 6e-11 >seq5307 Length=1324 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| |||| || || ||||| || ||||| ||||| Sbjct 955 CCACCTCGCAGACGAAGCACCAAGTGTAGAGTGGACTCTTTCTGGATATTATAGTCTGAG 896 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || |||||||| || || |||| |||||||| || || || || Sbjct 895 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG 836 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT--ACAGTGTCTGTGGCTTCAA 27198 | ||||| || || ||| || ||| || |||| | |||||| ||| || | Sbjct 835 ATGCCCTCCTTGTCTTGGATTTTAGCTTT--GGCATTCTCAATAGTGTCACTGGGCTCGA 778 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | || || || || | ||||||||||| || ||||||||||| ||||| |||| Sbjct 777 CCTCAAGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGC 723 >seq717 Length=839118 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || ||||| || ||||| |||| | |||| | || || Sbjct 563461 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTACAGTCTGAGAGAGTGCGGCCATCCTCC 563520 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || || |||| ||| |||| || || || || | ||||| || || | Sbjct 563521 AGCTGTTTGCCTGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 563580 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || ||| | | || | |||||| ||| || || || || || || | ||| Sbjct 563581 ATTTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCTTG 563640 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 |||||||| || ||||||||||| ||||| |||| Sbjct 563641 CCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGC 563675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424895190638952