Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq927 104 3e-17
seq41 104 3e-17
seq805 91.5 2e-13
>seq927
Length=612318
Score = 104 bits (114), Expect = 3e-17
Identities = 300/450 (67%), Gaps = 20/450 (4%)
Strand=Plus/Plus
Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521
||| || || || | ||| ||||| ||||| ||||||||||||| || || ||||||||
Sbjct 153628 ATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCAT 153687
Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAAT-AGGCTTCTCCCCAAACTGTGCCATGAGGC 74580
|||| || ||||| | | | | | |||| ||| ||| | || ||| || |
Sbjct 153688 GAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGCTAAAACCC-AGCTCCAGCATAAGTC 153746
Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640
|| |||||||||| |||| ||||| ||||| || ||| || ||||| ||
Sbjct 153747 TGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATGAGCTTCA 153806
Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCA-CCTCGCAAGCCCATTGGACAA----- 74694
||||| |||||| |||| ||||| || | ||| || |||| |||||
Sbjct 153807 CCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACA---GCATT-GACAATTATT 153862
Query 74695 TCTTGTGAATGTCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGG 74751
|||| ||| | ||| | ||||| || | ||||||| | | | | | || ||
Sbjct 153863 TCTT-TGACTTTCTGCTCCGAAGG---TTTGTGTATCAGGTGTTTGAACATCAGGCA-GG 153917
Query 74752 CAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811
|||| || || | || ||||||||||| || | ||| || ||||| | |||||||
Sbjct 153918 CAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAG 153977
Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871
||| ||||| | ||||| | ||| || || | || |||||| |||||||| |
Sbjct 153978 ACATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTC 154037
Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTT 74901
|||| || ||||| || |||| ||||
Sbjct 154038 CTTCCACTGCGGCAAAAGCTACAACACGTT 154067
>seq41
Length=5638949
Score = 104 bits (114), Expect = 3e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| |||||||||| || |||| |||||||||||| || | ||||| || ||
Sbjct 4992117 GTGAAGATGTAACGAGGACTAGCAGAATCCTTGCCACCGTGCAGCCTGGTACCAAACTGA 4992176
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| ||||||||||||||| ||| |||||||| || |||||||| |||| |
Sbjct 4992177 CCAATGGGCTGCAAGAGGTTCAGGTTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 4992236
Query 117425 ATCGT 117429
|| ||
Sbjct 4992237 ATGGT 4992241
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||||||||| || | || || | |||||||||||| ||||| || ||||||||
Sbjct 4992117 GTGAAGATGTAACGAGGACTAGCAGAATCCTTGCCACCGTGCAGCCTGGTACCAAACTGA 4992176
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | |||||| ||||| ||| ||||| ||||||||||||||||| | |
Sbjct 4992177 CCAATGGGCTGCAAGAGGTTCAGGTTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 4992236
Query 152149 ATCGT 152153
|| ||
Sbjct 4992237 ATGGT 4992241
>seq805
Length=738979
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| ||||||||| || ||||||||| ||| || || || || ||
Sbjct 419312 GTGAAAATATAACGAGGGCTTGCAGCGTCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 419371
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | |||| | | ||| | |||||| ||||||||||| |||||||| || |||
Sbjct 419372 CCGATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 419431
Query 117425 ATCGT 117429
|| ||
Sbjct 419432 ATAGT 419436
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || || || | ||| || || || |||||||| ||||| |||||||||||
Sbjct 419312 GTGAAAATATAACGAGGGCTTGCAGCGTCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 419371
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
|| |||| || | ||| | |||||| ||||| || ||||||||||||||||||
Sbjct 419372 CCGATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 419431
Query 152149 ATCGT 152153
|| ||
Sbjct 419432 ATAGT 419436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547164212845800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |