Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq927 104 3e-17 seq41 104 3e-17 seq805 91.5 2e-13 >seq927 Length=612318 Score = 104 bits (114), Expect = 3e-17 Identities = 300/450 (67%), Gaps = 20/450 (4%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || || || | ||| ||||| ||||| ||||||||||||| || || |||||||| Sbjct 153628 ATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCAT 153687 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAAT-AGGCTTCTCCCCAAACTGTGCCATGAGGC 74580 |||| || ||||| | | | | | |||| ||| ||| | || ||| || | Sbjct 153688 GAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGCTAAAACCC-AGCTCCAGCATAAGTC 153746 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 || |||||||||| |||| ||||| ||||| || ||| || ||||| || Sbjct 153747 TGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATGAGCTTCA 153806 Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCA-CCTCGCAAGCCCATTGGACAA----- 74694 ||||| |||||| |||| ||||| || | ||| || |||| ||||| Sbjct 153807 CCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACA---GCATT-GACAATTATT 153862 Query 74695 TCTTGTGAATGTCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGG 74751 |||| ||| | ||| | ||||| || | ||||||| | | | | | || || Sbjct 153863 TCTT-TGACTTTCTGCTCCGAAGG---TTTGTGTATCAGGTGTTTGAACATCAGGCA-GG 153917 Query 74752 CAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811 |||| || || | || ||||||||||| || | ||| || ||||| | ||||||| Sbjct 153918 CAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAG 153977 Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871 ||| ||||| | ||||| | ||| || || | || |||||| |||||||| | Sbjct 153978 ACATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTC 154037 Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTT 74901 |||| || ||||| || |||| |||| Sbjct 154038 CTTCCACTGCGGCAAAAGCTACAACACGTT 154067 >seq41 Length=5638949 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || |||| |||||||||||| || | ||||| || || Sbjct 4992117 GTGAAGATGTAACGAGGACTAGCAGAATCCTTGCCACCGTGCAGCCTGGTACCAAACTGA 4992176 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||||||||||||||| ||| |||||||| || |||||||| |||| | Sbjct 4992177 CCAATGGGCTGCAAGAGGTTCAGGTTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 4992236 Query 117425 ATCGT 117429 || || Sbjct 4992237 ATGGT 4992241 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | || || | |||||||||||| ||||| || |||||||| Sbjct 4992117 GTGAAGATGTAACGAGGACTAGCAGAATCCTTGCCACCGTGCAGCCTGGTACCAAACTGA 4992176 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| ||||| ||| ||||| ||||||||||||||||| | | Sbjct 4992177 CCAATGGGCTGCAAGAGGTTCAGGTTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 4992236 Query 152149 ATCGT 152153 || || Sbjct 4992237 ATGGT 4992241 >seq805 Length=738979 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||||||||| || ||||||||| ||| || || || || || Sbjct 419312 GTGAAAATATAACGAGGGCTTGCAGCGTCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 419371 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| | | ||| | |||||| ||||||||||| |||||||| || ||| Sbjct 419372 CCGATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 419431 Query 117425 ATCGT 117429 || || Sbjct 419432 ATAGT 419436 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || || || |||||||| ||||| ||||||||||| Sbjct 419312 GTGAAAATATAACGAGGGCTTGCAGCGTCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 419371 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| || | ||| | |||||| ||||| || |||||||||||||||||| Sbjct 419372 CCGATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 419431 Query 152149 ATCGT 152153 || || Sbjct 419432 ATAGT 419436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547164212845800