Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq612 170 2e-37 seq94 98.7 8e-16 seq183 87.8 1e-12 >seq612 Length=937308 Score = 170 bits (188), Expect = 2e-37 Identities = 399/597 (67%), Gaps = 5/597 (1%) Strand=Plus/Plus Query 29865 GCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGA 29924 |||| | ||||| || || | | || |||||| | ||| || |||| || |||| | Sbjct 700468 GCTGCATTTTCAGTGGCTCAATGCAATTCAGGTAAATGTGTGCATCTCTCAAAGTGTGTA 700527 Query 29925 CAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGC 29984 | || | || | | || | |||| | || | || ||| ||||| || ||||||| Sbjct 700528 CCAAGTTACCTTGCTTCAGGTCCGTGATAAGTGCAACCACGTAGGTGAGCAGGGAGTAGC 700587 Query 29985 TGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCT--GACA 30042 |||| ||||| || || || | || |||| ||| | ||||||| | || | | || Sbjct 700588 TGGCAATGTTGAATGGCACACATAGGCCCACGTCGGCTGACCTCTAGAAGGGTTTCTTCA 700647 Query 30043 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 | | ||||| | || |||||| ||||| || | ||| |||||| ||||||| |||| Sbjct 700648 CAACAGCTCACTGTTCACCACGTAGAACTGGCAAAGGGCATGGCACAGAGGAAGTTCCAT 700707 Query 30103 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 30162 ||| | ||||| || || || ||||||| | |||| | ||||| || |||||| | Sbjct 700708 GAGAAAAAGATCTTTTGGATTTCAAGCGCACAGGGTGATTCCTCTGTCATCAGGGTTGGT 700767 Query 30163 CCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCT 30222 |||| ||| | |||||||| || || || || || | || |||| Sbjct 700768 TTTGATAGTGTCAGTCACCTTTTGCAGTTGGTCTACTCCTTGACCTGCATAATCTGAATC 700827 Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||| ||| ||| |||||||||| || || || || || || | || Sbjct 700828 CATTTCTTTGTATTCTG-TCCCAAAAGCCTCCACTGAAAGCCATAAACTGGGCCTACATC 700886 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||||| ||| | | | || | | | | |||||| ||| | |||||| | Sbjct 700887 CCCTTCTTCTCTGCAGGAGCATCGCCGGCTATAC-AGAAGTCTGGGGACCTGTTGGCATG 700945 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30402 |||||| | || ||||| | || ||||| | ||||||| || ||| ||||| Sbjct 700946 CCAGATTCTCACTCCCTTGGACCACAGGTCTTTAGCACTTGTGGATCCCTTGATAAACCA 701005 Query 30403 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 || || |||||||| || ||||||| || || | | ||| || | ||| ||||| Sbjct 701006 CAACAACTCCTCCAAAACAACCTTCCAGAATACACATTGGGTTGTCA-GAGAGGAAA 701061 >seq94 Length=4258012 Score = 98.7 bits (108), Expect = 8e-16 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 110395 GGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTT 110454 || || || || || || ||||| |||| || |||||||| | | ||||| |||||| Sbjct 3581806 GGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTTTAAAGGTCGATTCTTC 3581865 Query 110455 TCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCC-TCTGAC 110513 ||||| ||||||||||| ||||| |||||||| || |||| ||||| || || |||| | Sbjct 3581866 TCGGGAATGGAGAACCAGGTCTTCCTACCCATAATTACCAAATTCTGTTTACCTTCTG-C 3581924 Query 110514 TGAAGA 110519 |||||| Sbjct 3581925 TGAAGA 3581930 >seq183 Length=3056380 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || |||||||| | | ||| | |||||| || || Sbjct 88616 TTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTTTAAAGGCCGATTCTTCTCAGGA 88675 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 88676 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 88723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406272909104532