Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq612 181 9e-41 >seq612 Length=937308 Score = 181 bits (200), Expect = 9e-41 Identities = 440/661 (67%), Gaps = 8/661 (1%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 |||||||||||| ||| | ||||||| || |||| || || |||| ||| Sbjct 700434 ATTTTGAGCTGGAACGACGTT---GGCTCTCCATGACGCTGCATTTTCAGTGGCTCAATG 700490 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 |||||||| || || ||||| | ||| || || |||| | || | || || Sbjct 700491 CAATTCAGGTAAATGTGTGCATCTCTCAAAGTGTGTACCAAGTTACCTTGCTTCAGGTCC 700550 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 || | | || | || ||| |||||||| | ||| || ||||||||||| ||||| | | Sbjct 700551 GTGATAAGTGCAACCACGTAGGTGAGCAGGGAGTAGCTGGCAATGTTGAATGGCACACAT 700610 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGG--CAGGACAGCTCCCCATTCGCGACGT 6731 | |||| ||| | || | | || | | || ||||||| | ||| | |||| Sbjct 700611 AGGCCCACGTCGGCTGACCTCTAGAAGGGTTTCTTCACAACAGCTCACTGTTCACCACGT 700670 Query 6732 AGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCC 6791 |||| ||||| |||| |||||| | || || |||| ||| ||||| || || || | Sbjct 700671 AGAACTGGCAAAGGGCATGGCACAGAGGAAGTTCCATGAGAAAAAGATCTTTTGGATTTC 700730 Query 6792 ACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACT 6851 | ||||||| ||| | ||||||||||||||| || | ||||| |||| | | Sbjct 700731 AAGCGCACAGGGTGATTCCTCTGTCATCAGGGTTGGTTTTGATAGTGTCAGTCACCTTTT 700790 Query 6852 GCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAA 6911 |||| ||||| |||| || || | ||| || | || | | || || | ||||| Sbjct 700791 GCAGTTGGTCTACTCCTTGACCTGCATAATCTGAATCCATTTCTTTGTATTCTGTCCCAA 700850 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC 6971 | | |||||||| || || || || ||||| | || || || || | | | | | | Sbjct 700851 A-AGCCTCCACTGAAAGCCATAAACTGGGCCTACATCCCCTTCTTCTCTGCAGGAGCATC 700909 Query 6972 CCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACG 7031 ||| | | ||| |||||| | |||| || || | |||||| |||| ||| |||| Sbjct 700910 GCCGGCTATACAG-AAGTCTGGGGACCTGTTGGCATGCCAGATTCTCACTCCCTTGGACC 700968 Query 7032 AGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCT 7091 | || || || | | |||| ||| | | ||||||| || |||||| | || ||| Sbjct 700969 ACAGGTCTTTAGCACTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACAACCT 701028 Query 7092 TCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCT 7151 ||||| | |||| || || ||||| || |||||||| | | ||| ||| || |||| Sbjct 701029 TCCAGAATACACATTGGGTTGTCAG-AGAGGAAATTCATCTCTCAGGCTGTGGCGTGCCT 701087 Query 7152 G 7152 | Sbjct 701088 G 701088 Score = 181 bits (200), Expect = 9e-41 Identities = 440/661 (67%), Gaps = 8/661 (1%) Strand=Plus/Minus Query 34193 CAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGG 34252 ||||| || ||| ||| | | |||||||| || ||||| || || |||| | |||| Sbjct 701088 CAGGCACGCCACAGCCTGAGAGATGAATTTCCTCT-CTGACAACCCAATGTGTATTCTGG 701030 Query 34253 AAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTC 34312 |||| || | |||||| || ||||||| | | ||| |||| | | || || || Sbjct 701029 AAGGTTGTTTTGGAGGAGTTGTTGTGGTTTATCAAGGGATCCACAAGTGCTAAAGACCTG 700970 Query 34313 TCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGG 34372 | |||| ||| |||| |||||| | || || |||| | |||||| ||| | | ||| Sbjct 700969 TGGTCCAAGGGAGTGAGAATCTGGCATGCCAACAGGTCCCCAGACTT-CTGTATAGCCGG 700911 Query 34373 GGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACAC 34432 | | | | | | || || || || | ||||| || || || || |||||||| | Sbjct 700910 CGATGCTCCTGCAGAGAAGAAGGGGATGTAGGCCCAGTTTATGGCTTTCAGTGGAGGCT- 700852 Query 34433 TTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTG 34492 |||||| | || || | | || | || ||| | || || |||| ||||| ||| Sbjct 700851 TTTGGGACAGAATACAAAGAAATGGATTCAGATTATGCAGGTCAAGGAGTAGACCAACTG 700792 Query 34493 CAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCG 34552 || | |||| ||||| | || ||||||||||||||| | ||| ||||||| Sbjct 700791 CAAAAGGTGACTGACACTATCAAAACCAACCCTGATGACAGAGGAATCACCCTGTGCGCT 700732 Query 34553 TGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTC 34612 || || || || ||||| ||| |||| || || | |||||| |||| ||||| ||| Sbjct 700731 TGAAATCCAAAAGATCTTTTTCTCATGGAACTTCCTCTGTGCCATGCCCTTTGCCAGTTC 700672 Query 34613 TACGTCGCGAATGGGGAGCTGTCCTG--CCAGCTCTATCAACGATCGGGAGACATGGGGT 34670 ||||| | ||| | ||||||| || | | || | | || | ||| |||| Sbjct 700671 TACGTGGTGAACAGTGAGCTGTTGTGAAGAAACCCTTCTAGAGGTCAGCCGACGTGGGCC 700612 Query 34671 TAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCG 34730 || | ||||| ||||||||||| || ||| | |||||||| ||| || | || | | || Sbjct 700611 TATGTGTGCCATTCAACATTGCCAGCTACTCCCTGCTCACCTACGTGGTTGCACTTATCA 700552 Query 34731 TGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACC 34790 || || | || | |||| || || ||| | ||||| || || |||||||| Sbjct 700551 CGGACCTGAAGCAAGGTAACTTGGTACACACTTTGAGAGATGCACACATTTACCTGAATT 700492 Query 34791 ACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAA 34850 ||| |||| || || |||| || ||||||| | ||| ||||||||||| Sbjct 700491 GCATTGAGCCACTGAAAATGCAGCGTCATGGAGAGCC---AACGTCGTTCCAGCTCAAAA 700435 Query 34851 T 34851 | Sbjct 700434 T 700434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448219977567120