Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq177 185 7e-42
seq94 154 1e-32
seq279 118 9e-22
>seq177
Length=2932736
Score = 185 bits (204), Expect = 7e-42
Identities = 198/262 (76%), Gaps = 0/262 (0%)
Strand=Plus/Minus
Query 1269 GAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAA 1328
||||| | || ||||| | |||| |||||||| ||| | || || |||||||||||
Sbjct 2838171 GAAACTTCCCAGGAAGTCTTGGTTGTGACATGGCAGAAAATCAAGGCTGCAAGCCCAGAA 2838112
Query 1329 AACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAA 1388
||||||| || || || || ||| |||||||| || ||| | || || || || ||
Sbjct 2838111 AACATGGTGACCTTCAGCAAGACCCATGGGGTTGTGGTCCAGGCTGCCTATAAGGACAAG 2838052
Query 1389 ATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTG 1448
|| ||||| |||||||| ||||| || ||| |||| || |||||||||||||| || ||
Sbjct 2838051 ATCAACATCACTGAGCTGGGACTCCAGAACTCAACCATTACCTTCTGGAACACCACCCTG 2837992
Query 1449 GATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGA 1508
|| ||||| ||||| || ||||| | || || || ||||| || |||||| | ||||||
Sbjct 2837991 GAGGATGAGGGGTGTTATAAGTGCCTCTTCAATACCTTTGGTTCCGGGAAGGTCTCAGGA 2837932
Query 1509 ATAGGGTGTCTAACCCTTTTTG 1530
|||| || || || || ||||
Sbjct 2837931 ATAGCCTGCCTCACTCTCTTTG 2837910
>seq94
Length=4258012
Score = 154 bits (170), Expect = 1e-32
Identities = 340/502 (68%), Gaps = 12/502 (2%)
Strand=Plus/Minus
Query 2193 ACTGCCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC----ATCT- 2247
|||| | ||| | || || | |||||||| |||||||| |||| ||| || | ||
Sbjct 3581990 ACTGACCTGGACCCCGCTCAGGAATGAATTCAAACATTTCCAAAGAATTACCACAACCTC 3581931
Query 2248 TCTTCCACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTT 2307
||||| | || ||||||||| | ||||||||||| || ||||| ||||| || ||
Sbjct 3581930 TCTTCAGCAGAAGGTAAACAGAATTTGGTAATTATGGGTAGGAAGACCTGGTTCTCCATT 3581871
Query 2308 CCCATTAAAAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAA 2367
||| || | | ||||| || |||| || ||| | |||||||||||| | || ||
Sbjct 3581870 CCCGAGAAGAATCGACCTTTAAAGGACAGGATTAATTTAGTTCTCAGTAGAGAACTCAAG 3581811
Query 2368 GAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATA 2427
|| ||| | || ||||| ||| ||| |||||| | ||| | | | || ||||
Sbjct 3581810 GA---ACCTCAAGGAGCTCATTTTCTTGACAAAAGTCTGGATAATGACTTAAAACTTATT 3581754
Query 2428 ATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAG-ATCTGT 2486
||||||| ||| | | | ||||| || |||| ||| | || || || |||||
Sbjct 3581753 GAGCAACCAGAACTAATAAATAAAGTGGACGAGGTTTGCATAGTGGGAGGCAGTTTCTGT 3581694
Query 2487 CTATGAGGAGAGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGC 2545
|| |||| ||| ||||| | || | | | || ||| | |||||||| |||
Sbjct 3581693 TTACAAGGAATCCATGAACAAGCT-AGGCCATCTTAGACTATTTGTGACAAGGATCATGC 3581635
Query 2546 AAAAATTTGAATGTGATACA-TACTTCCCAGAAATTAATCTTACCAAATACAAACAACTT 2604
| ||||| || |||| ||| | || ||||||||| || | |||| |||| |
Sbjct 3581634 AGTAATTTAAAAGTGACACATTGTTTTCCAGAAATTGATTTGGAGGAATATAAACTTATC 3581575
Query 2605 ACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTT 2664
| ||| ||||| |||| || | || || ||||| || || |||| |||||||||
Sbjct 3581574 CCAGAACACCCAGGGGTTCTTTCGGATGTCCAGGAAGAGAAAGGCATTAAGTACAAATTT 3581515
Query 2665 GAGATATATGaaaaaaaaaCAT 2686
| |||||| |||||||| ||
Sbjct 3581514 TAAGTATATGGAAAAAAAAGAT 3581493
>seq279
Length=2234831
Score = 118 bits (130), Expect = 9e-22
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||| ||| | |||||||| ||||||||| | ||||| || |||||||||
Sbjct 268174 GTGGTGGAGGAGCTTTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 268233
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 268234 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 268293
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 268294 ATCGCCCTGTGGATGACTGA 268313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414438555578044
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |