Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq177 185 7e-42 seq94 154 1e-32 seq279 118 9e-22 >seq177 Length=2932736 Score = 185 bits (204), Expect = 7e-42 Identities = 198/262 (76%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 1269 GAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAA 1328 ||||| | || ||||| | |||| |||||||| ||| | || || ||||||||||| Sbjct 2838171 GAAACTTCCCAGGAAGTCTTGGTTGTGACATGGCAGAAAATCAAGGCTGCAAGCCCAGAA 2838112 Query 1329 AACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAA 1388 ||||||| || || || || ||| |||||||| || ||| | || || || || || Sbjct 2838111 AACATGGTGACCTTCAGCAAGACCCATGGGGTTGTGGTCCAGGCTGCCTATAAGGACAAG 2838052 Query 1389 ATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTG 1448 || ||||| |||||||| ||||| || ||| |||| || |||||||||||||| || || Sbjct 2838051 ATCAACATCACTGAGCTGGGACTCCAGAACTCAACCATTACCTTCTGGAACACCACCCTG 2837992 Query 1449 GATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGA 1508 || ||||| ||||| || ||||| | || || || ||||| || |||||| | |||||| Sbjct 2837991 GAGGATGAGGGGTGTTATAAGTGCCTCTTCAATACCTTTGGTTCCGGGAAGGTCTCAGGA 2837932 Query 1509 ATAGGGTGTCTAACCCTTTTTG 1530 |||| || || || || |||| Sbjct 2837931 ATAGCCTGCCTCACTCTCTTTG 2837910 >seq94 Length=4258012 Score = 154 bits (170), Expect = 1e-32 Identities = 340/502 (68%), Gaps = 12/502 (2%) Strand=Plus/Minus Query 2193 ACTGCCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC----ATCT- 2247 |||| | ||| | || || | |||||||| |||||||| |||| ||| || | || Sbjct 3581990 ACTGACCTGGACCCCGCTCAGGAATGAATTCAAACATTTCCAAAGAATTACCACAACCTC 3581931 Query 2248 TCTTCCACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTT 2307 ||||| | || ||||||||| | ||||||||||| || ||||| ||||| || || Sbjct 3581930 TCTTCAGCAGAAGGTAAACAGAATTTGGTAATTATGGGTAGGAAGACCTGGTTCTCCATT 3581871 Query 2308 CCCATTAAAAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAA 2367 ||| || | | ||||| || |||| || ||| | |||||||||||| | || || Sbjct 3581870 CCCGAGAAGAATCGACCTTTAAAGGACAGGATTAATTTAGTTCTCAGTAGAGAACTCAAG 3581811 Query 2368 GAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATA 2427 || ||| | || ||||| ||| ||| |||||| | ||| | | | || |||| Sbjct 3581810 GA---ACCTCAAGGAGCTCATTTTCTTGACAAAAGTCTGGATAATGACTTAAAACTTATT 3581754 Query 2428 ATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAG-ATCTGT 2486 ||||||| ||| | | | ||||| || |||| ||| | || || || ||||| Sbjct 3581753 GAGCAACCAGAACTAATAAATAAAGTGGACGAGGTTTGCATAGTGGGAGGCAGTTTCTGT 3581694 Query 2487 CTATGAGGAGAGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGC 2545 || |||| ||| ||||| | || | | | || ||| | |||||||| ||| Sbjct 3581693 TTACAAGGAATCCATGAACAAGCT-AGGCCATCTTAGACTATTTGTGACAAGGATCATGC 3581635 Query 2546 AAAAATTTGAATGTGATACA-TACTTCCCAGAAATTAATCTTACCAAATACAAACAACTT 2604 | ||||| || |||| ||| | || ||||||||| || | |||| |||| | Sbjct 3581634 AGTAATTTAAAAGTGACACATTGTTTTCCAGAAATTGATTTGGAGGAATATAAACTTATC 3581575 Query 2605 ACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTT 2664 | ||| ||||| |||| || | || || ||||| || || |||| ||||||||| Sbjct 3581574 CCAGAACACCCAGGGGTTCTTTCGGATGTCCAGGAAGAGAAAGGCATTAAGTACAAATTT 3581515 Query 2665 GAGATATATGaaaaaaaaaCAT 2686 | |||||| |||||||| || Sbjct 3581514 TAAGTATATGGAAAAAAAAGAT 3581493 >seq279 Length=2234831 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| ||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 268174 GTGGTGGAGGAGCTTTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 268233 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 268234 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 268293 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 268294 ATCGCCCTGTGGATGACTGA 268313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414438555578044