Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq5307 129 5e-25
seq717 116 3e-21
seq298 100 2e-16
seq304 87.8 2e-12
seq56 86.0 5e-12
>seq5307
Length=1324
Score = 129 bits (142), Expect = 5e-25
Identities = 158/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| ||||| ||| |||||| || |||||||| || | || || || | || ||
Sbjct 938 CACCAAGTGTAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 879
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
||||||||||||||||| || |||||||||||||| |||||| | || ||| |||||
Sbjct 878 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTCTT 820
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|||||| |||| || | | || || || | ||| || || | ||||| | |
Sbjct 819 GGATTTTAGCTTTGGCATTCTCAATAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCT 760
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| |||||||| || || |||||||| |||||||
Sbjct 759 TGCCCGTCAGGGTCTTCACAAAGATCTGCATCT 727
>seq717
Length=839118
Score = 116 bits (128), Expect = 3e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || ||| |||||| || |||||| | || | || || || | || ||
Sbjct 563460 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTACAGTCTGAGAGAGTGCGGCCATCCTC 563519
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
||||||||||| ||||| || ||| |||||||||| |||||| | || ||| |||||
Sbjct 563520 CAGCTGTTTGCCTGCAAAAATCAGATGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTCTT 563578
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|||||| ||||| || | | || || || | ||| || || | ||||| | |
Sbjct 563579 GGATTTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCT 563638
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| |||||||| || || |||||||| |||||||
Sbjct 563639 TGCCCGTCAGGGTCTTCACAAAGATCTGCATCT 563671
>seq298
Length=2265018
Score = 100 bits (110), Expect = 2e-16
Identities = 153/213 (72%), Gaps = 5/213 (2%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || ||| |||||| || ||||| || || | |||| || | || ||
Sbjct 584616 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTCTAGTCAGAGAGTG--CGGCCATCCTC 584673
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
|||||||||||| |||| || |||||||||||||| |||||| | || ||| |||| |
Sbjct 584674 CAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGT-CT 584731
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|| ||| ||||| || | | || || || | ||| || || ||||| | |
Sbjct 584732 TGGATTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACCTCAGGTGTGATGGTCT 584791
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| |||||||| || || |||||| | |||||||
Sbjct 584792 TGCCCGTCAGGGTCTTCACAAAGGTCTGCATCT 584824
>seq304
Length=2338375
Score = 87.8 bits (96), Expect = 2e-12
Identities = 148/212 (70%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| | || |||| |||||| || |||||||| || | |||| | | || ||
Sbjct 1425271 CACCAAGTACAGGGTGCACTCTTTATGGATATTATAGTCCGAGAGTGCTGC--CATCTTC 1425214
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||||||||| ||||| || |||||||||||||| | || | || ||| |||||
Sbjct 1425213 CAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGATGGGATGCCCTCCTTGTCTTG 1425154
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||||| ||||| ||| | || || || | | || || ||||| | ||
Sbjct 1425153 TATTTTAGCTTTGACAGTCTCAGTAGTGTCCCTGGGC-CCGGACTCAGTGTGATGGTCTT 1425095
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
||| |||| || || |||||||| |||||||
Sbjct 1425094 GCCCATCAGGGTCTTCACAAAGATCTGCATCT 1425063
>seq56
Length=5443799
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/215 (69%), Gaps = 10/215 (5%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || ||| |||||| | |||||||| || | || | | || ||
Sbjct 2722509 CACCAAGTGCAGGGTGGACTCTTTCTAGATATTATAGTCTG--AGAGATA-----TCCTC 2722561
Query 39135 AAGCTGTTTGCCCGCAAATATAAGA---CGCTGCTGGTCGGTGGGCACGCTCTCTTTGTC 39191
||||||||||| ||||| || ||| |||||||||| | || | || ||| |||||
Sbjct 2722562 CAGCTGTTTGCCTGCAAAAATCAGATGCTGCTGCTGGTCAGGTGGAATGCCCTCCTTGTC 2722621
Query 39192 CATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251
|||||| ||| | || ||| || || || | ||| || |||| ||||| |
Sbjct 2722622 TTGGATTTTAGCTTTAACATTCTCCATGGTGTCACTGGGCTCAACCTCCAGTGTGATGGT 2722681
Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|| |||||||| || || |||||||| ||||||
Sbjct 2722682 CTTGCCCGTCAGAGTCTTCACAAAGATCCGCATCT 2722716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429505965156323
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |