Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5307 129 5e-25 seq717 116 3e-21 seq298 100 2e-16 seq304 87.8 2e-12 seq56 86.0 5e-12 >seq5307 Length=1324 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| ||||| ||| |||||| || |||||||| || | || || || | || || Sbjct 938 CACCAAGTGTAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 879 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||||||||| || |||||||||||||| |||||| | || ||| ||||| Sbjct 878 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTCTT 820 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| |||| || | | || || || | ||| || || | ||||| | | Sbjct 819 GGATTTTAGCTTTGGCATTCTCAATAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCT 760 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | |||||||| || || |||||||| ||||||| Sbjct 759 TGCCCGTCAGGGTCTTCACAAAGATCTGCATCT 727 >seq717 Length=839118 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || |||||| | || | || || || | || || Sbjct 563460 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTACAGTCTGAGAGAGTGCGGCCATCCTC 563519 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||| ||||| || ||| |||||||||| |||||| | || ||| ||||| Sbjct 563520 CAGCTGTTTGCCTGCAAAAATCAGATGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTCTT 563578 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| ||||| || | | || || || | ||| || || | ||||| | | Sbjct 563579 GGATTTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCT 563638 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | |||||||| || || |||||||| ||||||| Sbjct 563639 TGCCCGTCAGGGTCTTCACAAAGATCTGCATCT 563671 >seq298 Length=2265018 Score = 100 bits (110), Expect = 2e-16 Identities = 153/213 (72%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || ||||| || || | |||| || | || || Sbjct 584616 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTCTAGTCAGAGAGTG--CGGCCATCCTC 584673 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||||||||| |||| || |||||||||||||| |||||| | || ||| |||| | Sbjct 584674 CAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGT-CT 584731 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| ||||| || | | || || || | ||| || || ||||| | | Sbjct 584732 TGGATTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACCTCAGGTGTGATGGTCT 584791 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | |||||||| || || |||||| | ||||||| Sbjct 584792 TGCCCGTCAGGGTCTTCACAAAGGTCTGCATCT 584824 >seq304 Length=2338375 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| | || |||| |||||| || |||||||| || | |||| | | || || Sbjct 1425271 CACCAAGTACAGGGTGCACTCTTTATGGATATTATAGTCCGAGAGTGCTGC--CATCTTC 1425214 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || |||||||||||||| | || | || ||| ||||| Sbjct 1425213 CAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGATGGGATGCCCTCCTTGTCTTG 1425154 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||||| ||||| ||| | || || || | | || || ||||| | || Sbjct 1425153 TATTTTAGCTTTGACAGTCTCAGTAGTGTCCCTGGGC-CCGGACTCAGTGTGATGGTCTT 1425095 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||| |||| || || |||||||| ||||||| Sbjct 1425094 GCCCATCAGGGTCTTCACAAAGATCTGCATCT 1425063 >seq56 Length=5443799 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| | |||||||| || | || | | || || Sbjct 2722509 CACCAAGTGCAGGGTGGACTCTTTCTAGATATTATAGTCTG--AGAGATA-----TCCTC 2722561 Query 39135 AAGCTGTTTGCCCGCAAATATAAGA---CGCTGCTGGTCGGTGGGCACGCTCTCTTTGTC 39191 ||||||||||| ||||| || ||| |||||||||| | || | || ||| ||||| Sbjct 2722562 CAGCTGTTTGCCTGCAAAAATCAGATGCTGCTGCTGGTCAGGTGGAATGCCCTCCTTGTC 2722621 Query 39192 CATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 |||||| ||| | || ||| || || || | ||| || |||| ||||| | Sbjct 2722622 TTGGATTTTAGCTTTAACATTCTCCATGGTGTCACTGGGCTCAACCTCCAGTGTGATGGT 2722681 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || |||||||| || || |||||||| |||||| Sbjct 2722682 CTTGCCCGTCAGAGTCTTCACAAAGATCCGCATCT 2722716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429505965156323