Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq612 140 3e-28 seq94 96.9 3e-15 seq183 87.8 1e-12 >seq612 Length=937308 Score = 140 bits (154), Expect = 3e-28 Identities = 370/568 (65%), Gaps = 5/568 (1%) Strand=Plus/Plus Query 29666 AGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29725 ||||| | ||| ||||||| || ||||| || || | || | | || | |||| Sbjct 700497 AGGTAAATGTGTGCATCTCTCAAAGTGTGTACCAAGTTACCTTGCTTCAGGTCCGTGATA 700556 Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 | || | || ||| ||||| || ||||||||||| ||||| || ||||| | || ||| Sbjct 700557 AGTGCAACCACGTAGGTGAGCAGGGAGTAGCTGGCAATGTTGAATGGCACACATAGGCCC 700616 Query 29786 ATGTCCCCTGACCTCTGGTAGAGCT--GGCACGAGAGCTCTCCGTCGCTCACGTAAAACT 29843 | ||| ||||||||| | || | | ||| | ||||| | || |||||| |||| Sbjct 700617 ACGTCGGCTGACCTCTAGAAGGGTTTCTTCACAACAGCTCACTGTTCACCACGTAGAACT 700676 Query 29844 GACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCAC 29903 | || | |||||||||| ||||||| |||||||| | ||||| || || || || | Sbjct 700677 GGCAAAGGGCATGGCACAGAGGAAGTTCCATGAGAAAAAGATCTTTTGGATTTCAAGCGC 700736 Query 29904 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCT 29963 ||| | |||| | ||||| || |||||| | |||| ||| | |||||||| | Sbjct 700737 ACAGGGTGATTCCTCTGTCATCAGGGTTGGTTTTGATAGTGTCAGTCACCTTTTGCAGTT 700796 Query 29964 GATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCC 30023 | || || || || | || |||| | ||| ||| Sbjct 700797 GGTCTACTCCTTGACCTGCATAATCTGAATCCATTTCTTTGTATTCTGTCCC-AAAAGCC 700855 Query 30024 TCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT 30083 ||||||| || || || || || || | || || ||||| ||| | | | || Sbjct 700856 TCCACTGAAAGCCATAAACTGGGCCTACATCCCCTTCTTCTCTGCAGGAGCATCGCCGGC 700915 Query 30084 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 30143 | | | | |||||| ||| | |||||| | |||||| | || ||||| | || | Sbjct 700916 TATAC-AGAAGTCTGGGGACCTGTTGGCATGCCAGATTCTCACTCCCTTGGACCACAGGT 700974 Query 30144 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAA 30203 |||| | ||||||| || ||| ||||||| || |||||||| || ||||||| | Sbjct 700975 CTTTAGCACTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACAACCTTCCAGA 701034 Query 30204 AGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 | || | | ||| || | ||| ||||| Sbjct 701035 ATACACATTGGGTTGTCA-GAGAGGAAA 701061 >seq94 Length=4258012 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/230 (71%), Gaps = 11/230 (5%) Strand=Plus/Plus Query 114278 GGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTT 114337 || || || || || || ||||| |||| || | |||||| | | ||||| |||||| Sbjct 3581806 GGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTTTAAAGGTCGATTCTTC 3581865 Query 114338 TCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACC-TCTGTC 114396 ||||| ||||||||||| ||||| |||||||| || |||| ||||| ||||| |||| Sbjct 3581866 TCGGGAATGGAGAACCAGGTCTTCCTACCCATAATTACCAAATTCTGTTTACCTTCTGCT 3581925 Query 114397 GGA-AGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCACCGGAT 114455 | | ||| || | ||| | | | || ||||| || || || || | ||| Sbjct 3581926 GAAGAGAGGTTGTGGTAATTCTTTGGAAATGTTTGAATTCATT------CCTGAGCGGGG 3581979 Query 114456 GCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACACGCTG 114503 ||| | ||| |||||||| || | ||| | |||| ||| ||||||| || Sbjct 3581980 TCCAGGTCAG-TCTCCGTTCTTGCTGATCCTCATGTTCTGGGACACGGTG 3582028 >seq183 Length=3056380 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | |||||| | | ||| | |||||| || || Sbjct 88616 TTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTTTAAAGGCCGATTCTTCTCAGGA 88675 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 88676 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 88723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406125722686906