Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq927 441 1e-118 seq636 136 5e-27 seq1 129 8e-25 seq156 116 5e-21 seq138 116 5e-21 >seq927 Length=612318 Score = 441 bits (488), Expect = 1e-118 Identities = 664/940 (71%), Gaps = 8/940 (1%) Strand=Plus/Plus Query 47789 GGTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTC 47844 ||||| |||| |||||| |||| || | |||| ||| ||| | || ||||| |||| Sbjct 153558 GGTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTC 153617 Query 47845 CCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATA 47904 | ||| | ||||| || || || | ||||| || || ||||| || ||||||| ||| | Sbjct 153618 CTATTCTCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAA 153677 Query 47905 TATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTG 47964 |||| ||||| || |||||||| || || | | |||| || |||| || | || Sbjct 153678 TATTCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGCTAAAACCCAGCTCCA 153737 Query 47965 AAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTA 48024 || ||||| ||||| || ||||| || | ||||| | |||||||| || | Sbjct 153738 GCATAAGTCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAA 153797 Query 48025 TAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTA 48084 | || || || || | ||||| || || ||||| ||||| || | ||||||| || | Sbjct 153798 TGAGCTTCACCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACAGCATTGACAA 153857 Query 48085 TTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATG 48144 |||| | | || | | ||| ||| | | || ||||| ||||| | || | Sbjct 153858 TTATTTCTTTGACTTTCTGCTCCGAAGGTTTGTGTATCAGGTGTTTGAACATCAGGCAGG 153917 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 |||| ||||| || | ||| |||||||| ||||| | |||||| ||||||||||| || | Sbjct 153918 CAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAG 153977 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264 ||| ||||| | ||| |||||||| ||||| | || ||||| ||||||||||| || | Sbjct 153978 ACATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTC 154037 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCC 48321 |||| || || ||||| || || | ||||| || | || || |||| |||| Sbjct 154038 CTTCCACTGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCC 154097 Query 48322 ACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381 | || |||||||| ||||||||||| |||||||||||||| || || || || |||| Sbjct 154098 AACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTGAAGA 154157 Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441 || | | |||| ||| |||||||| || || || | | ||||||||||| || | Sbjct 154158 GACACTCCCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACTATACATCTCAG 154217 Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 | || | ||| || | || || || || || || ||||| | |||||||| ||||| | Sbjct 154218 AATGTTTGTTTCCA-TGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAA 154276 Query 48502 CCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 || | ||| || || |||| || ||||| ||||| |||||||| |||||||| | Sbjct 154277 TTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCAGCAAAGA 154336 Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGA 48621 | || | ||||| ||||||||| | || | | |||| | ||||| | || Sbjct 154337 AAGCAAGAACATGGGATATAAAATATCTCTCATCAGGCTTCAGGGCTTCCCAGTGCTGGA 154396 Query 48622 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACA 48681 || || || | ||| ||||| |||||||||||||| || ||||| ||||| ||||||| Sbjct 154397 GGTCCTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTCTTATACA 154456 Query 48682 TATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 | | ||| |||||| ||||| ||| || || | ||||| Sbjct 154457 TCTGCCAAATATCATGGTATTCGATAGGAAAGACGACAAA 154496 >seq636 Length=1077480 Score = 136 bits (150), Expect = 5e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| |||||||||||||| || || |||||||||||||| | || Sbjct 918550 TGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 918491 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| ||| |||||||| |||||||| ||||| || || | | ||||||| Sbjct 918490 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 918431 Query 77247 TTTCTGAGACCAT 77259 || || | ||||| Sbjct 918430 TTCCTTATACCAT 918418 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | |||||||| || ||| Sbjct 891287 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGGGTAAACCACCTCTCAGAAAGAAGGTTG 891228 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 891227 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGATACCCTCATCAAC 891168 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| |||||||||||| || Sbjct 891167 ATATGTTGAGGTCTTTCAGCC 891147 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | || Sbjct 899269 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 899210 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| |||||||| | || || ||||||| ||| Sbjct 899209 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGT 899150 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 899149 TCCAGGTAAATAGCAAATGCCCCAGGTCG 899121 >seq1 Length=12387654 Score = 129 bits (142), Expect = 8e-25 Identities = 247/359 (69%), Gaps = 19/359 (5%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||| ||| |||||| | || |||||| Sbjct 7595573 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTTAGTGTCATCTAAAACTTAGACTTCC 7595516 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | ||||||||| | || |||| | | || || || || |||| |||||| | || Sbjct 7595515 TCTATTTCAGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGGTCACCCTTTTTG 7595456 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || ||||| | ||||| |||||| Sbjct 7595455 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAATATTTCCTCTGTAATCT 7595396 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||| | ||| || | |||| || || ||||| | ||| Sbjct 7595395 TCATCTATGACACCAGCTCCTATATCAATGAAATATTTTGCAGCCAAGCCAGAACATGGA 7595336 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 ||| ||||||||| ||||| || | || |||| |||| || ||||| | | Sbjct 7595335 ACTACTCTTCCATAGCACCCAGAA----GGAAGAGCCATCTGAATGTCGGTTTTCACTA- 7595281 Query 46167 TCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGC 46223 | ||||||| ||| || | || || || || |||||||| | ||||| || || Sbjct 7595280 -CGATTTTCTCCATAGGTGGTAATGTGTAATCATAGGCACTGTACAGGTCATAGCCCGC 7595223 >seq156 Length=3029033 Score = 116 bits (128), Expect = 5e-21 Identities = 179/249 (72%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||||| | |||||||| |||||| | ||| |||||| Sbjct 18943 TCCAGTGGAACCAAAACCTCCTGAGC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 19000 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || |||||| | || ||| | | || || || || |||| |||||| | || Sbjct 19001 TCTATTTCTGGATAAAA-ATCTGTTCACAAATGAGCTGTGCAATTCGGTCACCCTTTTTG 19059 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || ||||| | |||||||||||| Sbjct 19060 ACTTCAAACTTTTCTTTGCCAA-ATTAAACAGTACAACACCAATATTTCCTCTATAATCT 19118 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||| ||||| || | |||| || || |||||| ||| Sbjct 19119 TCATCTATGACACCAACTCCTACATCTATGAAATGTTTTGCAGCCAAGCCAGAT-GCGGA 19177 Query 46111 GCTATTCTT 46119 |||| |||| Sbjct 19178 GCTACTCTT 19186 >seq138 Length=3455650 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | |||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 2542792 TCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 2542851 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| || |||||||| || ||||| || || ||||| || Sbjct 2542852 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCCACTGCGGCAAAAGC 2542910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694603058281440