Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq45 86.0 6e-12 >seq45 Length=5545317 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||| | | ||||| ||||| ||| ||| ||||| || |||||||| ||| Sbjct 1737672 CCGCCCCACAGATGGAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAG 1737731 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG-CGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||| | | || || ||||| | ||| | || ||||| | ||| ||||| | || Sbjct 1737732 AGAGTGTGACCATCCTCCAGCTGTTGGCCCCACAAAAATCAGACTCTGCTGGTCAGGTGG 1737791 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| |||||| |||| || | ||||| | | || || Sbjct 1737792 GATGCCCTCCTTGTCTTGGATTTTA-GCTTTGACATT--CTCAGTGGTGTCAGGCTTGAC 1737848 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||| ||||| || ||||||||||| Sbjct 1737849 CTCGAGTGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 1737896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462260248705200