Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq19 205 1e-47
seq878 84.2 2e-11
>seq19
Length=4596781
Score = 205 bits (226), Expect = 1e-47
Identities = 592/901 (66%), Gaps = 24/901 (3%)
Strand=Plus/Plus
Query 16629 CATCCAATGAAAATGTGTTATCTTGTTTATGA-ACAACACCCATTCTTTGGTAATCGCTA 16687
||||||| | ||| | || | ||| | ||| | || ||||| || || || || |
Sbjct 3964772 CATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCATCCTCTGATACTCACCT 3964831
Query 16688 ACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAA 16747
|| | ||||| || ||||| || || || || |||||||||||||| |||||
Sbjct 3964832 ACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATATTCTCCATGAAGTCAAAT 3964886
Query 16748 GGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTA 16805
||||| || ||||||| || | | || || || || | || || || |
Sbjct 3964887 GGATTTTCTACTCTGAAAACCTTGCCAA--AACCTAGCTCCAGCATAAGTCGGTCTGCCA 3964944
Query 16806 CAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAG 16865
| || || ||||| || |||||| ||| ||||| | || || || || | |
Sbjct 3964945 CGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGAGCTTCACAGGCAAGG 3965004
Query 16866 CTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCA---ACTC 16922
||||| | || | |||||||| ||| || | ||||||| | | ||||
Sbjct 3965005 TCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCAT---TAATAATTATTTCCTTCACTC 3965061
Query 16923 GTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTA 16982
| || ||| ||| | || || ||||| |||||||| || || || || || ||||
Sbjct 3965062 TCTGCTTGGAAGGTTTGTGGACCAGTTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTA 3965121
Query 16983 ATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTT 17042
| ||||| |||||||| |||||||| || ||||| |||| || || |||| | ||||
Sbjct 3965122 AACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTCAGCCAGG-CATCAGGTCGCGTT 3965180
Query 17043 TCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAA 17102
|||| | ||| ||||||| || || || ||||||||||| || || || || | ||||
Sbjct 3965181 TCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAA 3965240
Query 17103 ACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACT 17162
| | | | ||||| |||| || || ||||||| | | |||| | | |||| |
Sbjct 3965241 AGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCAGTCCAATGCAAGGCCCAGT 3965300
Query 17163 CGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTTTTTC 17220
| || || ||||| ||| ||| || | | ||| || | | || ||| |||| |
Sbjct 3965301 CTGCCTT---CTTTACACAAGGCATTGTCTGGAGGGCGTTGAAGAGAAATTCCCTTTCTT 3965357
Query 17221 CTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTC 17280
| | | || | | || | || ||||| || |||||||| || || || ||||| ||
Sbjct 3965358 CGGAA--TCTTTAACGTAACTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTC 3965415
Query 17281 CATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAA 17340
|||||| || || || || || || || |||||||| | || |||||||| | ||
Sbjct 3965416 CATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAA 3965475
Query 17341 TCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATG 17400
|| ||| | | ||||| || || ||||| || |||| | || || |||| | ||
Sbjct 3965476 CCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACAAAGAAAGCCAGAACGTG 3965535
Query 17401 CTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATAT 17460
| || ||| | || || || | || | || || | || ||||| |
Sbjct 3965536 GGATAGAAAGTATCTCTCCTCAGGCTTCAGGGATTCCTGGTGCTGAATGTCCTTGGAAAG 3965595
Query 17461 ATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATC 17520
|||||| ||||| | |||||||| |||| | || || | |||||| | |||||||||
Sbjct 3965596 ATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATC 3965655
Query 17521 A 17521
|
Sbjct 3965656 A 3965656
>seq878
Length=898115
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| |||||||| |||||||| || ||||| || | || |||||| || |||||||
Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||| | || || || ||||||||||| || || || || | ||||| |
Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035
Query 17106 C 17106
|
Sbjct 679034 C 679034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517437491193480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |