Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq19 205 1e-47 seq878 84.2 2e-11 >seq19 Length=4596781 Score = 205 bits (226), Expect = 1e-47 Identities = 592/901 (66%), Gaps = 24/901 (3%) Strand=Plus/Plus Query 16629 CATCCAATGAAAATGTGTTATCTTGTTTATGA-ACAACACCCATTCTTTGGTAATCGCTA 16687 ||||||| | ||| | || | ||| | ||| | || ||||| || || || || | Sbjct 3964772 CATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCATCCTCTGATACTCACCT 3964831 Query 16688 ACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAA 16747 || | ||||| || ||||| || || || || |||||||||||||| ||||| Sbjct 3964832 ACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATATTCTCCATGAAGTCAAAT 3964886 Query 16748 GGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTA 16805 ||||| || ||||||| || | | || || || || | || || || | Sbjct 3964887 GGATTTTCTACTCTGAAAACCTTGCCAA--AACCTAGCTCCAGCATAAGTCGGTCTGCCA 3964944 Query 16806 CAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAG 16865 | || || ||||| || |||||| ||| ||||| | || || || || | | Sbjct 3964945 CGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGAGCTTCACAGGCAAGG 3965004 Query 16866 CTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCA---ACTC 16922 ||||| | || | |||||||| ||| || | ||||||| | | |||| Sbjct 3965005 TCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCAT---TAATAATTATTTCCTTCACTC 3965061 Query 16923 GTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTA 16982 | || ||| ||| | || || ||||| |||||||| || || || || || |||| Sbjct 3965062 TCTGCTTGGAAGGTTTGTGGACCAGTTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTA 3965121 Query 16983 ATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTT 17042 | ||||| |||||||| |||||||| || ||||| |||| || || |||| | |||| Sbjct 3965122 AACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTCAGCCAGG-CATCAGGTCGCGTT 3965180 Query 17043 TCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAA 17102 |||| | ||| ||||||| || || || ||||||||||| || || || || | |||| Sbjct 3965181 TCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAA 3965240 Query 17103 ACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACT 17162 | | | | ||||| |||| || || ||||||| | | |||| | | |||| | Sbjct 3965241 AGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCAGTCCAATGCAAGGCCCAGT 3965300 Query 17163 CGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTTTTTC 17220 | || || ||||| ||| ||| || | | ||| || | | || ||| |||| | Sbjct 3965301 CTGCCTT---CTTTACACAAGGCATTGTCTGGAGGGCGTTGAAGAGAAATTCCCTTTCTT 3965357 Query 17221 CTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTC 17280 | | | || | | || | || ||||| || |||||||| || || || ||||| || Sbjct 3965358 CGGAA--TCTTTAACGTAACTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTC 3965415 Query 17281 CATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAA 17340 |||||| || || || || || || || |||||||| | || |||||||| | || Sbjct 3965416 CATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAA 3965475 Query 17341 TCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATG 17400 || ||| | | ||||| || || ||||| || |||| | || || |||| | || Sbjct 3965476 CCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACAAAGAAAGCCAGAACGTG 3965535 Query 17401 CTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATAT 17460 | || ||| | || || || | || | || || | || ||||| | Sbjct 3965536 GGATAGAAAGTATCTCTCCTCAGGCTTCAGGGATTCCTGGTGCTGAATGTCCTTGGAAAG 3965595 Query 17461 ATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATC 17520 |||||| ||||| | |||||||| |||| | || || | |||||| | ||||||||| Sbjct 3965596 ATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATC 3965655 Query 17521 A 17521 | Sbjct 3965656 A 3965656 >seq878 Length=898115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || ||||| || | || |||||| || ||||||| Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | ||||| | Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035 Query 17106 C 17106 | Sbjct 679034 C 679034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517437491193480