Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq19 208 8e-49 seq3332 138 1e-27 seq674 111 2e-19 >seq19 Length=4596781 Score = 208 bits (230), Expect = 8e-49 Identities = 398/582 (68%), Gaps = 16/582 (3%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 || ||||| ||||| || || || ||||| || |||| || || |||||||| |||||| Sbjct 3965085 AGTTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGT 3965144 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || |||||||| || | || ||||| | |||||||| | ||||||||||| ||| Sbjct 3965145 TCATTGGAAAACGTCAGCCA-GGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCA 3965203 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || || |||||||| || || || |||| ||||| | | | |||||| |||| Sbjct 3965204 AAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAG 3965263 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 ||||| ||||| | | | |||| | | |||| || || || |||| |||| | Sbjct 3965264 GTAGCCTCTTTGTCGCCAGTCCAATGCAAGGCCCAGTCTGCCTT---CTTTACACAAGGC 3965320 Query 16424 ATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTA- 16480 || || | | ||| || | | || ||| |||| | | |||| | ||| ||||| Sbjct 3965321 ATTGTCTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCT---TTA---ACGTAA 3965374 Query 16481 ---TCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCA 16537 ||||| || | ||||||||| || || || ||||| || ||||| || || || ||| Sbjct 3965375 CTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCA 3965434 Query 16538 TAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCA 16597 ||||| || || || || | || || ||||| | ||| || ||| ||| ||| ||| Sbjct 3965435 TAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCA 3965494 Query 16598 TTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCG 16657 || || || || ||||| | |||| || |||| | ||| | || ||| | || Sbjct 3965495 TTTACTATGCCATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCC 3965554 Query 16658 TCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTC 16717 |||| | || | | | | | || ||||| | |||||| ||||| | ||| Sbjct 3965555 TCAGGCTTCAGGGATTCCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTC 3965614 Query 16718 CAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCA 16759 |||||| |||| | || || | |||||| | |||||||||| Sbjct 3965615 CAAAAGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATCA 3965656 >seq3332 Length=249688 Score = 138 bits (152), Expect = 1e-27 Identities = 555/863 (64%), Gaps = 17/863 (2%) Strand=Plus/Minus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 || || ||||||||||| || || || | || ||||| ||||||| ||||| ||||| Sbjct 148947 TTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAGGTCAAATGGATTT 148888 Query 15992 G-TAG-CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAA-TCTATCTGCTACAAAT 16048 || ||| ||| ||| | || |||| | || |||| || ||||| | ||| Sbjct 148887 TCTACTCTGGAAAC--CTTGCTAAAACCTAGTTTC-TACCTAAGTCAGTCTGCCATGAAT 148831 Query 16049 TCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTT 16108 || ||||| || ||||| ||| || || || || || || || | || | | Sbjct 148830 TCAATATACTGCTTTATTAACATGCAGTTCATCCCAATGAGCTTCACGGGCAAGGCCTGT 148771 Query 16109 GTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCA 16168 | | || | || |||||| ||| || | || | || || | ||| || Sbjct 148770 GGGAGGAACTCCTGGTCTATCCTAACAGCATTGATAGTTATTTCCTTCACTCTCTGCTCT 148711 Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228 || ||| ||||| |||||||| ||||| || || || |||| |||| || || Sbjct 148710 GAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAACCCTCA 148651 Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAA-GTTAACCCTGGCATTTTTCCTCGTTTCTTTAA 16287 |||||||| ||||| || |||||||| || | || ||||| | | |||||| | Sbjct 148650 TCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTCTTGAG 148591 Query 16288 CCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGAT 16347 ||||||||||| ||| | || || ||||| | || || || | ||||| | | Sbjct 148590 CCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCAC 148531 Query 16348 TAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTT 16407 | |||| |||| ||||| ||||| | | || ||| | |||| || || || Sbjct 148530 ATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACACAAGGCCCAATCTGCCTT 148471 Query 16408 TTGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATA 16465 | || |||| ||| || || |||| || | | || |||| | | | || | Sbjct 148470 CTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGA--A 148413 Query 16466 TCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCT 16525 || | ||||| || ||| | || | ||| |||| || || || ||||| || ||||| Sbjct 148412 TCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCA 148353 Query 16526 ATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC 16585 || || || |||||||| || | || || | || || ||||| | | | | ||| Sbjct 148352 ATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTTCTTGGCCACACCACTCC 148293 Query 16586 GCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG--CTT-- 16641 ||| ||| ||||| || | || |||| | ||||| || |||| ||||| | | Sbjct 148292 ACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAGCCAGAATGTGAACGTGG 148233 Query 16642 --AATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATA 16699 || |||| | | || |||| | || | ||| | || | || ||||| | | Sbjct 148232 GGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGTGTTGAATGTCCTTGGAAAGA 148173 Query 16700 TCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCA 16759 | ||| ||||| | ||||||||| |||| | || || ||| |||| | ||||| ||| Sbjct 148172 TTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACATCTGCCAAAGGTCA 148113 Query 16760 TTGTATTGTATGGGAAATACGAC 16782 | ||| | || || || | ||| Sbjct 148112 TGGTACTTCATAGGGAAGATGAC 148090 >seq674 Length=1058379 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| |||||||| || | || ||||| |||| ||||| Sbjct 558250 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 558191 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||||| Sbjct 558190 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 558131 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 558130 CCACCACTCTTTCC 558117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511307571924520