Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq19 208 8e-49
seq3332 138 1e-27
seq674 111 2e-19
>seq19
Length=4596781
Score = 208 bits (230), Expect = 8e-49
Identities = 398/582 (68%), Gaps = 16/582 (3%)
Strand=Plus/Plus
Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243
|| ||||| ||||| || || || ||||| || |||| || || |||||||| ||||||
Sbjct 3965085 AGTTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGT 3965144
Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303
|| |||||||| || | || ||||| | |||||||| | ||||||||||| |||
Sbjct 3965145 TCATTGGAAAACGTCAGCCA-GGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCA 3965203
Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363
|| || || |||||||| || || || |||| ||||| | | | |||||| ||||
Sbjct 3965204 AAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAG 3965263
Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423
||||| ||||| | | | |||| | | |||| || || || |||| |||| |
Sbjct 3965264 GTAGCCTCTTTGTCGCCAGTCCAATGCAAGGCCCAGTCTGCCTT---CTTTACACAAGGC 3965320
Query 16424 ATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTA- 16480
|| || | | ||| || | | || ||| |||| | | |||| | ||| |||||
Sbjct 3965321 ATTGTCTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCT---TTA---ACGTAA 3965374
Query 16481 ---TCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCA 16537
||||| || | ||||||||| || || || ||||| || ||||| || || || |||
Sbjct 3965375 CTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCA 3965434
Query 16538 TAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCA 16597
||||| || || || || | || || ||||| | ||| || ||| ||| ||| |||
Sbjct 3965435 TAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCA 3965494
Query 16598 TTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCG 16657
|| || || || ||||| | |||| || |||| | ||| | || ||| | ||
Sbjct 3965495 TTTACTATGCCATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCC 3965554
Query 16658 TCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTC 16717
|||| | || | | | | | || ||||| | |||||| ||||| | |||
Sbjct 3965555 TCAGGCTTCAGGGATTCCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTC 3965614
Query 16718 CAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCA 16759
|||||| |||| | || || | |||||| | ||||||||||
Sbjct 3965615 CAAAAGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATCA 3965656
>seq3332
Length=249688
Score = 138 bits (152), Expect = 1e-27
Identities = 555/863 (64%), Gaps = 17/863 (2%)
Strand=Plus/Minus
Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991
|| || ||||||||||| || || || | || ||||| ||||||| ||||| |||||
Sbjct 148947 TTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAGGTCAAATGGATTT 148888
Query 15992 G-TAG-CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAA-TCTATCTGCTACAAAT 16048
|| ||| ||| ||| | || |||| | || |||| || ||||| | |||
Sbjct 148887 TCTACTCTGGAAAC--CTTGCTAAAACCTAGTTTC-TACCTAAGTCAGTCTGCCATGAAT 148831
Query 16049 TCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTT 16108
|| ||||| || ||||| ||| || || || || || || || | || | |
Sbjct 148830 TCAATATACTGCTTTATTAACATGCAGTTCATCCCAATGAGCTTCACGGGCAAGGCCTGT 148771
Query 16109 GTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCA 16168
| | || | || |||||| ||| || | || | || || | ||| ||
Sbjct 148770 GGGAGGAACTCCTGGTCTATCCTAACAGCATTGATAGTTATTTCCTTCACTCTCTGCTCT 148711
Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228
|| ||| ||||| |||||||| ||||| || || || |||| |||| || ||
Sbjct 148710 GAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAACCCTCA 148651
Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAA-GTTAACCCTGGCATTTTTCCTCGTTTCTTTAA 16287
|||||||| ||||| || |||||||| || | || ||||| | | |||||| |
Sbjct 148650 TCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTCTTGAG 148591
Query 16288 CCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGAT 16347
||||||||||| ||| | || || ||||| | || || || | ||||| | |
Sbjct 148590 CCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCAC 148531
Query 16348 TAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTT 16407
| |||| |||| ||||| ||||| | | || ||| | |||| || || ||
Sbjct 148530 ATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACACAAGGCCCAATCTGCCTT 148471
Query 16408 TTGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATA 16465
| || |||| ||| || || |||| || | | || |||| | | | || |
Sbjct 148470 CTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGA--A 148413
Query 16466 TCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCT 16525
|| | ||||| || ||| | || | ||| |||| || || || ||||| || |||||
Sbjct 148412 TCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCA 148353
Query 16526 ATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC 16585
|| || || |||||||| || | || || | || || ||||| | | | | |||
Sbjct 148352 ATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTTCTTGGCCACACCACTCC 148293
Query 16586 GCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG--CTT-- 16641
||| ||| ||||| || | || |||| | ||||| || |||| ||||| | |
Sbjct 148292 ACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAGCCAGAATGTGAACGTGG 148233
Query 16642 --AATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATA 16699
|| |||| | | || |||| | || | ||| | || | || ||||| | |
Sbjct 148232 GGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGTGTTGAATGTCCTTGGAAAGA 148173
Query 16700 TCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCA 16759
| ||| ||||| | ||||||||| |||| | || || ||| |||| | ||||| |||
Sbjct 148172 TTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACATCTGCCAAAGGTCA 148113
Query 16760 TTGTATTGTATGGGAAATACGAC 16782
| ||| | || || || | |||
Sbjct 148112 TGGTACTTCATAGGGAAGATGAC 148090
>seq674
Length=1058379
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| ||||| |||||||| || | || ||||| |||| |||||
Sbjct 558250 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 558191
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || ||||| ||||| || || || |||| |||||||
Sbjct 558190 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 558131
Query 16344 CGATTAATCGTTCC 16357
| | | || ||||
Sbjct 558130 CCACCACTCTTTCC 558117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511307571924520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |