Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq54 93.3 3e-14 seq2484 86.0 5e-12 >seq54 Length=3562170 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || ||||| || || | | || ||||| ||||| | ||||| || | ||| Sbjct 3279679 ATGGCCCTCCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAACGGCGAGCTGTCC 3279620 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || || | |||||||| |||||||| |||||||| || || || ||||||||||| | Sbjct 3279619 TGTCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGTGTGCCCTTCAACATTGCCAGC 3279560 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || || || || |||||||| | || || | ||||| || || Sbjct 3279559 TACGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAA 3279516 >seq2484 Length=411614 Score = 86.0 bits (94), Expect = 5e-12 Identities = 250/384 (65%), Gaps = 1/384 (0%) Strand=Plus/Minus Query 18810 GGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAG 18869 ||||| || ||||| ||||||| | ||||| ||| | | ||| | | || Sbjct 96015 GGCTTTCATTGGAGGTGTTTTGGAACCGAATACAAAAATAAGAATTCAGATTCTTCGGGT 95956 Query 18870 CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGA 18929 |||||| | || || ||| | | | || || |||| |||| ||||| | | || Sbjct 95955 CAAGGAGTAGACCAACTGGAGAAGGCTACTGACGCAATCCAAACCAACCCTGGTGACAGA 95896 Query 18930 CGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGT 18989 |||| || | | |||||||||||||| | | || | || || |||||| Sbjct 95895 AGAATCATCCTGTGTGGTTGGAATCCAAAGGCTCTTCCTCTCCTGACCCTGCCTCCACAC 95836 Query 18990 CACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGA 19049 ||| | | || | ||| || | | || ||||| | |||||||| || | ||| || Sbjct 95835 CACGCCCTGTGCCGGTTCTATGCGGTGAATGGTGAGCTGTCCTGCCAGGTTTGCCACAGG 95776 Query 19050 TCGGGGGATATGGGCCTTGGGGTACCGTTCAACATT-GCTGGATATGCACTTCTTACCTA 19108 || | | |||||||| || || || |||| || |||| || || || || ||||| Sbjct 95775 TCACGAGCCATGGGCCTGGGTGTGCCCTTCATCACCAGCTGTGTAGGCCCTGCTCACCTA 95716 Query 19109 CATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGC 19168 || ||| | || | ||||| || || | | | || || ||| |||| ||||| Sbjct 95715 CACAGTCTCACACATCACAGGCCTGAAGCCAGCTAACTTCATAATTACTTTGGGAGATGC 95656 Query 19169 ACATATTTACTTGAATCATATAGA 19192 |||||||||| ||||||| || || Sbjct 95655 ACATATTTACCTGAATCACATCGA 95632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399422634892995