Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq54 93.3 3e-14
seq2484 86.0 5e-12
>seq54
Length=3562170
Score = 93.3 bits (102), Expect = 3e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031
|||| || ||||| || || | | || ||||| ||||| | ||||| || | |||
Sbjct 3279679 ATGGCCCTCCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAACGGCGAGCTGTCC 3279620
Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091
|| || | |||||||| |||||||| |||||||| || || || ||||||||||| |
Sbjct 3279619 TGTCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGTGTGCCCTTCAACATTGCCAGC 3279560
Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135
|| || || || |||||||| | || || | ||||| || ||
Sbjct 3279559 TACGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAA 3279516
>seq2484
Length=411614
Score = 86.0 bits (94), Expect = 5e-12
Identities = 250/384 (65%), Gaps = 1/384 (0%)
Strand=Plus/Minus
Query 18810 GGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAG 18869
||||| || ||||| ||||||| | ||||| ||| | | ||| | | ||
Sbjct 96015 GGCTTTCATTGGAGGTGTTTTGGAACCGAATACAAAAATAAGAATTCAGATTCTTCGGGT 95956
Query 18870 CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGA 18929
|||||| | || || ||| | | | || || |||| |||| ||||| | | ||
Sbjct 95955 CAAGGAGTAGACCAACTGGAGAAGGCTACTGACGCAATCCAAACCAACCCTGGTGACAGA 95896
Query 18930 CGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGT 18989
|||| || | | |||||||||||||| | | || | || || ||||||
Sbjct 95895 AGAATCATCCTGTGTGGTTGGAATCCAAAGGCTCTTCCTCTCCTGACCCTGCCTCCACAC 95836
Query 18990 CACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGA 19049
||| | | || | ||| || | | || ||||| | |||||||| || | ||| ||
Sbjct 95835 CACGCCCTGTGCCGGTTCTATGCGGTGAATGGTGAGCTGTCCTGCCAGGTTTGCCACAGG 95776
Query 19050 TCGGGGGATATGGGCCTTGGGGTACCGTTCAACATT-GCTGGATATGCACTTCTTACCTA 19108
|| | | |||||||| || || || |||| || |||| || || || || |||||
Sbjct 95775 TCACGAGCCATGGGCCTGGGTGTGCCCTTCATCACCAGCTGTGTAGGCCCTGCTCACCTA 95716
Query 19109 CATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGC 19168
|| ||| | || | ||||| || || | | | || || ||| |||| |||||
Sbjct 95715 CACAGTCTCACACATCACAGGCCTGAAGCCAGCTAACTTCATAATTACTTTGGGAGATGC 95656
Query 19169 ACATATTTACTTGAATCATATAGA 19192
|||||||||| ||||||| || ||
Sbjct 95655 ACATATTTACCTGAATCACATCGA 95632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399422634892995
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |