Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1935 459 2e-124 seq33 379 1e-100 seq1514 221 9e-53 seq3029 194 1e-44 seq2793 129 4e-25 seq54 87.8 1e-12 >seq1935 Length=508564 Score = 459 bits (508), Expect = 2e-124 Identities = 443/569 (78%), Gaps = 0/569 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||||||||||||||| ||||||||||||| | |||||| || || |||| Sbjct 352317 ATTAATCCTTCTTCTCATATACTTCATATTTGTACTTAATGCCTTTCTCCTCCTGGACAT 352376 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 ||||||||||| || ||||||| || |||||| | |||||| | ||||| |||| ||| Sbjct 352377 CAGAAAGAACACCTGCATATTCTGGCAGAAGTTTATGTTTCTCCAAATCAATTTCTTGAA 352436 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || || |||||| || ||||| ||||| |||||||| ||| |||||| || || Sbjct 352437 AAAATACGTTACTTTCAAATTCCTGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTG 352496 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | |||| ||||| |||| |||||||| ||||| |||||| |||||||| |||| Sbjct 352497 GTTTGTTCATGGCTTCCTTATGAACAGAACTGCCTCCCGCTATCCAAACCATGTCCACTT 352556 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267 | ||||||||||||| || || ||| |||||| |||||||| | ||| || || | || Sbjct 352557 TGTTTGCTAATTCTGATTGCTCAATAAATTTTAATGCATCATCCAGACTTTTGGCAAGAA 352616 Query 4268 AATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTT 4327 ||||||||| |||||| | ||||| || || |||||||||| | |||||||||| | | Sbjct 352617 AATGAGCTCCTTGTGGAGGTTCCTTGAGGTCTCTGCTGAGAACTAAATTAATTCTGTCCT 352676 Query 4328 TTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAAT 4387 ||||||| | ||||||| ||||| |||||||| |||| ||||||||||||| |||| Sbjct 352677 TTAAAGGTTGATTCTTCTTGGGAATAGAGAACCATATCTTCCTACCCATAATCACCAAAT 352736 Query 4388 TCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCA 4447 ||||||| || ||| || || || || ||||||||||||||| | || |||||| Sbjct 352737 CCTGTTTACCTTCTACTGAGGAGGTTGTGGTCATTCTTTGGAAAAACATGAATTCATTCC 352796 Query 4448 TAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAA 4507 | || ||||| ||||||| || | ||||| ||||||||||| || | ||||| Sbjct 352797 TGAGCGGGGGCCAGGGCAAGTCCCCGTTCTTGCCGATGCCCATGTTCTGGGACACAGCGG 352856 Query 4508 CAATGCAGTTTAGTGCTTGAACCATAATA 4536 ||||||||||| ||||||| ||| Sbjct 352857 TGATGCAGTTTAGCCTACGAACCATGATA 352885 >seq33 Length=4095547 Score = 379 bits (420), Expect = 1e-100 Identities = 419/554 (76%), Gaps = 18/554 (3%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 ||| || |||||||||| |||||||||||||||| ||||| | || ||| || || |||| Sbjct 3118333 ATTCATCATTCTTCTCACATACTTCAAATTTGTATTTAATGCCTTCCTCCTCCTGGACAT 3118274 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 ||||||||||| ||| | |||||| |||||||| | || || |||||||| Sbjct 3118273 CAGAAAGAACACCTGGG---------AGAAGTTTTTATTTCTCCAAATTAATTTCTGGAA 3118223 Query 4088 AAAAG-GTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 |||| ||||||| |||||| || |||| |||| |||||||| ||||||| | || | Sbjct 3118222 AAAAACGTGTCACTTTCAAATTCCTGCACATTCCTTGTCACAAATAGTTTAACGTGGCCT 3118163 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | |||| ||||| ||||| |||||||| |||| | |||||| |||||||| ||| Sbjct 3118162 GGCTTGTTCATGGCTTCCTTATAAACAGAACTGACTCCCACTATCCAAACCATGTCCACT 3118103 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 ||||||||||||||||| || || || |||||| |||||||| | ||| || || | | Sbjct 3118102 TTATTTGCTAATTCTGG-TGCTCAAAAACTTTTAAGGCATCATCCAGACTTTTGGCAAGA 3118044 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 |||||||||| | || |||||| || || ||||| || | || ||||||| | Sbjct 3118043 AAATGAGCTC-CCGGGGGGGCTCCTCAAGGTC---TCTGAGCACTAAATCAATTCTGTCC 3117988 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 |||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| ||| Sbjct 3117987 TTTAAAGGTCGATTCTTCTCGGGAATAGAGAACCATGTCTTCCTACCCATAATCACCAAA 3117928 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 ||||||||| | | | || || | || ||||||||| |||||| || || |||||| Sbjct 3117927 TTCTGTTTACC---TTCTGAGGAGGATGTGGTCATTCTTCGGAAATACTTGAACTCATTC 3117871 Query 4447 ATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCA 4506 | | | ||||| |||| || || | |||| |||||| |||| | | ||||| Sbjct 3117870 CTGAATGAGGGCCACGGCAGGTCCCCATTCTTGCTGATGCCCCTGTTCTTGGACACAGCG 3117811 Query 4507 ACAATGCAGTTTAG 4520 | ||||||||||| Sbjct 3117810 AGGATGCAGTTTAG 3117797 >seq1514 Length=603359 Score = 221 bits (244), Expect = 9e-53 Identities = 395/589 (67%), Gaps = 72/589 (12%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || || ||| |||||| | ||||||||||||||| |||||||| | ||| Sbjct 180300 AAAACACCTTCACATGAATCATTCTTTTTATATACTTCAAATTTCTACTTAATGCCTTTT 180359 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || ||| ||||||||||||||| |||||| | ||| ||||||||| | | | Sbjct 180360 TCCTCCTGGACACCAGAAAGAACACTTGGGTATTCTGGAAGAAGCTTGTATTTCCCCAAA 180419 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| ||||| |||||| |||| || ||||||| ||| Sbjct 180420 TCAATTTCTGTAAAAAATGTGTTACTTTCAAAG------------------------AGT 180455 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 || |||| || ||| | || | ||||| ||||| |||||||| ||||| | |||||| Sbjct 180456 TTGAGATGGCTTGGCTTGTTCGTGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAA 180515 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTT---------CG--------------- 4230 |||||||| ||||| |||| ||||||||| | || || Sbjct 180516 ACCATGTCCACTTTCTTTGTTAATTCTGGTTATTATGTATATCCGTGGTTATGTTTTTGT 180575 Query 4231 ---------------GTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCT 4275 |||||||||| ||||||| | ||| || |||| ||||||||| Sbjct 180576 GTACTTGAAGAGTTAATAAGTTTTAAGGCATCATGCAGACTTTTGGCTAGAAAATGAGCG 180635 Query 4276 CTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGC 4335 | |||||| | ||||| | ||| | |||||||| | ||||||||| | | |||||| Sbjct 180636 CCTTGTGGAGGTTCCTTGA-TTCTCTCCTGAGAACTAAGTTAATTCTGTCCTCTAAAGGT 180694 Query 4336 CGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTA 4395 | |||||||| |||| |||| || ||| | ||||||||||||| ||||||| |||| Sbjct 180695 CAGTTCTTCTAGGGAAGAGAGAGTCATGTCCTCCTACCCATAATCACAAAATTCTATTTA 180754 Query 4396 ------TCT-GGTACAGAA-GATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCA 4447 | | |||| || ||| | ||||||||| |||||| | || |||||| Sbjct 180755 CAAAATTATAATTACAAAATTCTGTTCTGGTCATTCTTGGGAAATACCTGAATTCATTCC 180814 Query 4448 TAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTG 4496 | | ||||| || | ||| | | ||||| ||||||| ||| || Sbjct 180815 TGGATGGGGGCCAGGGTAGGTTTCTGTTCTTGCCTATGCCCACGTTCTG 180863 >seq3029 Length=301928 Score = 194 bits (214), Expect = 1e-44 Identities = 188/242 (78%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| ||| | |||| | | |||||||| || ||||| |||||||| || | ||| ||| Sbjct 126015 AGCTCTTAAGCCACATGGCGCACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGC 125956 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || | || ||| | ||| | | | |||| || || ||| Sbjct 125955 ATCTTCTCCAGCCGGAAGGAGTGGGGACAGTGCTGAGACTCCCTTCGCAGAACAAGGATC 125896 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| ||||| ||||| |||||||||||||||| || ||||| |||||||| ||||| Sbjct 125895 TCTTGCTGGATGGGGACAGAGTTCATGTGGTAGTTTATCTTCCCTTCAGCATTGACACAG 125836 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || |||| ||| ||||| || ||||| ||||||||||||||||| || | || |||||| Sbjct 125835 CCCAAGTGGCGGCACTTGGCCTCCCAGATCACAGAGGGATATCTCTCAGGGTCCTCATTG 125776 Query 27171 CG 27172 || Sbjct 125775 CG 125774 >seq2793 Length=352559 Score = 129 bits (142), Expect = 4e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | || ||| |||||||| |||||||||||||||||||| Sbjct 57072 TTATAAACAGAACTGCCTCCTACTACCCAAACCATGTCCACTTTATTTGCTAATTCTGGT 57131 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || |||||||||| |||||||| | ||| || || | ||||||||||| |||||| Sbjct 57132 TGCTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 57191 Query 4285 AGCTCC 4290 | ||| Sbjct 57192 GGTTCC 57197 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 64500 CTTGAGGTCTCTGCTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCGGG 64559 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| | ||||||||||| |||||||||||| || Sbjct 64560 AATAGAGAACCATGTCTTCCTCCCCATAATCACCAAATTCTGTTTACCT 64608 Score = 113 bits (124), Expect = 3e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104 || ||| || |||||| |||||||| | ||||| |||||||||||| ||||||| |||| Sbjct 53890 TACTCTGGCAGAAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCA 53949 Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164 || || ||||| ||||| |||||||| ||| |||||| || ||| | |||| ||||| Sbjct 53950 AATTCCTGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTGGTTTGTTCATGGCTTCC 54009 Query 4165 TT 4166 || Sbjct 54010 TT 54011 Score = 95.1 bits (104), Expect = 9e-15 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||||||||||||||||||||||||||||| | |||||| || || |||| Sbjct 46867 ATTAATCGTTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACAT 46926 Query 4028 TAGAAAGAACACTTGGATAT 4047 ||| ||||||| ||| ||| Sbjct 46927 CAGATAGAACACCTGGGTAT 46946 >seq54 Length=3562170 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||||||||| ||||| || || || | ||| || | Sbjct 3282057 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCCT 3282116 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||||| | || || || | || || || || ||| ||||| |||||||| | Sbjct 3282117 CTTCTCTGTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGA 3282176 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCC 102195 | | ||| || || || || || || || |||||||| Sbjct 3282177 TTTTCACTCCCTTTGAAGACAGTTCCTTAGCGTTTGTAGATCC 3282219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361177625661461