Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq1935 459 2e-124
seq33 379 1e-100
seq1514 221 9e-53
seq3029 194 1e-44
seq2793 129 4e-25
seq54 87.8 1e-12
>seq1935
Length=508564
Score = 459 bits (508), Expect = 2e-124
Identities = 443/569 (78%), Gaps = 0/569 (0%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| |||||||||||||||||| ||||||||||||| | |||||| || || ||||
Sbjct 352317 ATTAATCCTTCTTCTCATATACTTCATATTTGTACTTAATGCCTTTCTCCTCCTGGACAT 352376
Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087
||||||||||| || ||||||| || |||||| | |||||| | ||||| |||| |||
Sbjct 352377 CAGAAAGAACACCTGCATATTCTGGCAGAAGTTTATGTTTCTCCAAATCAATTTCTTGAA 352436
Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147
|||| || || |||||| || ||||| ||||| |||||||| ||| |||||| || ||
Sbjct 352437 AAAATACGTTACTTTCAAATTCCTGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTG 352496
Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207
| | |||| ||||| |||| |||||||| ||||| |||||| |||||||| ||||
Sbjct 352497 GTTTGTTCATGGCTTCCTTATGAACAGAACTGCCTCCCGCTATCCAAACCATGTCCACTT 352556
Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267
| ||||||||||||| || || ||| |||||| |||||||| | ||| || || | ||
Sbjct 352557 TGTTTGCTAATTCTGATTGCTCAATAAATTTTAATGCATCATCCAGACTTTTGGCAAGAA 352616
Query 4268 AATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTT 4327
||||||||| |||||| | ||||| || || |||||||||| | |||||||||| | |
Sbjct 352617 AATGAGCTCCTTGTGGAGGTTCCTTGAGGTCTCTGCTGAGAACTAAATTAATTCTGTCCT 352676
Query 4328 TTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAAT 4387
||||||| | ||||||| ||||| |||||||| |||| ||||||||||||| ||||
Sbjct 352677 TTAAAGGTTGATTCTTCTTGGGAATAGAGAACCATATCTTCCTACCCATAATCACCAAAT 352736
Query 4388 TCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCA 4447
||||||| || ||| || || || || ||||||||||||||| | || ||||||
Sbjct 352737 CCTGTTTACCTTCTACTGAGGAGGTTGTGGTCATTCTTTGGAAAAACATGAATTCATTCC 352796
Query 4448 TAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAA 4507
| || ||||| ||||||| || | ||||| ||||||||||| || | |||||
Sbjct 352797 TGAGCGGGGGCCAGGGCAAGTCCCCGTTCTTGCCGATGCCCATGTTCTGGGACACAGCGG 352856
Query 4508 CAATGCAGTTTAGTGCTTGAACCATAATA 4536
||||||||||| ||||||| |||
Sbjct 352857 TGATGCAGTTTAGCCTACGAACCATGATA 352885
>seq33
Length=4095547
Score = 379 bits (420), Expect = 1e-100
Identities = 419/554 (76%), Gaps = 18/554 (3%)
Strand=Plus/Minus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
||| || |||||||||| |||||||||||||||| ||||| | || ||| || || ||||
Sbjct 3118333 ATTCATCATTCTTCTCACATACTTCAAATTTGTATTTAATGCCTTCCTCCTCCTGGACAT 3118274
Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087
||||||||||| ||| | |||||| |||||||| | || || ||||||||
Sbjct 3118273 CAGAAAGAACACCTGGG---------AGAAGTTTTTATTTCTCCAAATTAATTTCTGGAA 3118223
Query 4088 AAAAG-GTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146
|||| ||||||| |||||| || |||| |||| |||||||| ||||||| | || |
Sbjct 3118222 AAAAACGTGTCACTTTCAAATTCCTGCACATTCCTTGTCACAAATAGTTTAACGTGGCCT 3118163
Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206
|| | |||| ||||| ||||| |||||||| |||| | |||||| |||||||| |||
Sbjct 3118162 GGCTTGTTCATGGCTTCCTTATAAACAGAACTGACTCCCACTATCCAAACCATGTCCACT 3118103
Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266
||||||||||||||||| || || || |||||| |||||||| | ||| || || | |
Sbjct 3118102 TTATTTGCTAATTCTGG-TGCTCAAAAACTTTTAAGGCATCATCCAGACTTTTGGCAAGA 3118044
Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326
|||||||||| | || |||||| || || ||||| || | || ||||||| |
Sbjct 3118043 AAATGAGCTC-CCGGGGGGGCTCCTCAAGGTC---TCTGAGCACTAAATCAATTCTGTCC 3117988
Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386
|||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| |||
Sbjct 3117987 TTTAAAGGTCGATTCTTCTCGGGAATAGAGAACCATGTCTTCCTACCCATAATCACCAAA 3117928
Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446
||||||||| | | | || || | || ||||||||| |||||| || || ||||||
Sbjct 3117927 TTCTGTTTACC---TTCTGAGGAGGATGTGGTCATTCTTCGGAAATACTTGAACTCATTC 3117871
Query 4447 ATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCA 4506
| | | ||||| |||| || || | |||| |||||| |||| | | |||||
Sbjct 3117870 CTGAATGAGGGCCACGGCAGGTCCCCATTCTTGCTGATGCCCCTGTTCTTGGACACAGCG 3117811
Query 4507 ACAATGCAGTTTAG 4520
| |||||||||||
Sbjct 3117810 AGGATGCAGTTTAG 3117797
>seq1514
Length=603359
Score = 221 bits (244), Expect = 9e-53
Identities = 395/589 (67%), Gaps = 72/589 (12%)
Strand=Plus/Plus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| || || || ||| |||||| | ||||||||||||||| |||||||| | |||
Sbjct 180300 AAAACACCTTCACATGAATCATTCTTTTTATATACTTCAAATTTCTACTTAATGCCTTTT 180359
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074
|| || || ||| ||||||||||||||| |||||| | ||| ||||||||| | | |
Sbjct 180360 TCCTCCTGGACACCAGAAAGAACACTTGGGTATTCTGGAAGAAGCTTGTATTTCCCCAAA 180419
Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134
|||| ||||| |||||| |||| || ||||||| |||
Sbjct 180420 TCAATTTCTGTAAAAAATGTGTTACTTTCAAAG------------------------AGT 180455
Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194
|| |||| || ||| | || | ||||| ||||| |||||||| ||||| | ||||||
Sbjct 180456 TTGAGATGGCTTGGCTTGTTCGTGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAA 180515
Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTT---------CG--------------- 4230
|||||||| ||||| |||| ||||||||| | || ||
Sbjct 180516 ACCATGTCCACTTTCTTTGTTAATTCTGGTTATTATGTATATCCGTGGTTATGTTTTTGT 180575
Query 4231 ---------------GTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCT 4275
|||||||||| ||||||| | ||| || |||| |||||||||
Sbjct 180576 GTACTTGAAGAGTTAATAAGTTTTAAGGCATCATGCAGACTTTTGGCTAGAAAATGAGCG 180635
Query 4276 CTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGC 4335
| |||||| | ||||| | ||| | |||||||| | ||||||||| | | ||||||
Sbjct 180636 CCTTGTGGAGGTTCCTTGA-TTCTCTCCTGAGAACTAAGTTAATTCTGTCCTCTAAAGGT 180694
Query 4336 CGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTA 4395
| |||||||| |||| |||| || ||| | ||||||||||||| ||||||| ||||
Sbjct 180695 CAGTTCTTCTAGGGAAGAGAGAGTCATGTCCTCCTACCCATAATCACAAAATTCTATTTA 180754
Query 4396 ------TCT-GGTACAGAA-GATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCA 4447
| | |||| || ||| | ||||||||| |||||| | || ||||||
Sbjct 180755 CAAAATTATAATTACAAAATTCTGTTCTGGTCATTCTTGGGAAATACCTGAATTCATTCC 180814
Query 4448 TAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTG 4496
| | ||||| || | ||| | | ||||| ||||||| ||| ||
Sbjct 180815 TGGATGGGGGCCAGGGTAGGTTTCTGTTCTTGCCTATGCCCACGTTCTG 180863
>seq3029
Length=301928
Score = 194 bits (214), Expect = 1e-44
Identities = 188/242 (78%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990
|||| ||| | |||| | | |||||||| || ||||| |||||||| || | ||| |||
Sbjct 126015 AGCTCTTAAGCCACATGGCGCACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGC 125956
Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050
|||||||| |||| || || | || ||| | ||| | | | |||| || || |||
Sbjct 125955 ATCTTCTCCAGCCGGAAGGAGTGGGGACAGTGCTGAGACTCCCTTCGCAGAACAAGGATC 125896
Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110
||||| ||||| ||||| |||||||||||||||| || ||||| |||||||| |||||
Sbjct 125895 TCTTGCTGGATGGGGACAGAGTTCATGTGGTAGTTTATCTTCCCTTCAGCATTGACACAG 125836
Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170
|| |||| ||| ||||| || ||||| ||||||||||||||||| || | || ||||||
Sbjct 125835 CCCAAGTGGCGGCACTTGGCCTCCCAGATCACAGAGGGATATCTCTCAGGGTCCTCATTG 125776
Query 27171 CG 27172
||
Sbjct 125775 CG 125774
>seq2793
Length=352559
Score = 129 bits (142), Expect = 4e-25
Identities = 104/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| ||||| | || ||| |||||||| ||||||||||||||||||||
Sbjct 57072 TTATAAACAGAACTGCCTCCTACTACCCAAACCATGTCCACTTTATTTGCTAATTCTGGT 57131
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284
|| || |||||||||| |||||||| | ||| || || | ||||||||||| ||||||
Sbjct 57132 TGCTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 57191
Query 4285 AGCTCC 4290
| |||
Sbjct 57192 GGTTCC 57197
Score = 116 bits (128), Expect = 3e-21
Identities = 91/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| || || |||||||||| | |||||||||| | |||||||| || |||||||| ||
Sbjct 64500 CTTGAGGTCTCTGCTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCGGG 64559
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| ||||| | ||||||||||| |||||||||||| ||
Sbjct 64560 AATAGAGAACCATGTCTTCCTCCCCATAATCACCAAATTCTGTTTACCT 64608
Score = 113 bits (124), Expect = 3e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104
|| ||| || |||||| |||||||| | ||||| |||||||||||| ||||||| ||||
Sbjct 53890 TACTCTGGCAGAAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCA 53949
Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164
|| || ||||| ||||| |||||||| ||| |||||| || ||| | |||| |||||
Sbjct 53950 AATTCCTGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTGGTTTGTTCATGGCTTCC 54009
Query 4165 TT 4166
||
Sbjct 54010 TT 54011
Score = 95.1 bits (104), Expect = 9e-15
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| |||||||||||||||||||||||||||||||| | |||||| || || ||||
Sbjct 46867 ATTAATCGTTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACAT 46926
Query 4028 TAGAAAGAACACTTGGATAT 4047
||| ||||||| ||| |||
Sbjct 46927 CAGATAGAACACCTGGGTAT 46946
>seq54
Length=3562170
Score = 87.8 bits (96), Expect = 1e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
|||| |||||||| || ||||||||||||||||| ||||| || || || | ||| || |
Sbjct 3282057 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCCT 3282116
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| ||||||| | || || || | || || || || ||| ||||| |||||||| |
Sbjct 3282117 CTTCTCTGTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGA 3282176
Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCC 102195
| | ||| || || || || || || || ||||||||
Sbjct 3282177 TTTTCACTCCCTTTGAAGACAGTTCCTTAGCGTTTGTAGATCC 3282219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361177625661461
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