Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq1818 100 2e-16
seq975 100 2e-16
seq1 89.7 4e-13
seq9145 86.0 5e-12
seq2520 86.0 5e-12
seq293 86.0 5e-12
seq182 86.0 5e-12
>seq1818
Length=636242
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||||
Sbjct 433230 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 433171
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| || || | | || | ||| || ||| ||||| ||||| | || |||
Sbjct 433170 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 433111
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| || ||||| |||||||| ||||| ||||||||||| ||| || | || |||
Sbjct 433110 CAGCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCTGACTAC 433051
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|| ||||| ||||| ||||||||||| | |||||
Sbjct 433050 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 433016
>seq975
Length=833997
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||
Sbjct 558717 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCG 558658
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| || || | | || | ||| || ||| ||||| ||||| | || |||
Sbjct 558657 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 558598
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| || ||||| |||||||| ||||| |||||||||||| ||| || | || |||
Sbjct 558597 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 558538
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|| ||||| ||||| ||||||||||| | |||||
Sbjct 558537 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 558503
>seq1
Length=12736304
Score = 89.7 bits (98), Expect = 4e-13
Identities = 141/201 (70%), Gaps = 1/201 (0%)
Strand=Plus/Minus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||||
Sbjct 12236889 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 12236830
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| || || | | || | ||| || ||| ||||| ||||| | || |||
Sbjct 12236829 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCC-GAT 12236771
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| || ||||| |||||||| ||||| |||||||||||| ||| || | || |||
Sbjct 12236770 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 12236711
Query 29139 AATATTCAGAAGGAATCTACT 29159
|| ||||| ||||| ||||||
Sbjct 12236710 AACATTCAAAAGGAGTCTACT 12236690
>seq9145
Length=4041
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|| ||||| || ||| | ||||| | ||||| || ||||| || ||| ||||||
Sbjct 500 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 441
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
|||| || | | || | ||| || ||| |||| ||||| | || |||
Sbjct 440 TCAGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGAT 381
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| || ||||| |||||||| ||||| |||||||||||| ||| || | || |||
Sbjct 380 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 321
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|| ||||| |||| || |||||||| | |||||
Sbjct 320 AACATTCAAAAGGCGTCCACTCTTCATCTTGTGTT 286
>seq2520
Length=369870
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|| ||||| || ||| | ||||| | ||||| || ||||| || ||| ||||||
Sbjct 183988 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 184047
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
|||| || | | || | ||| || ||| |||| ||||| | || |||
Sbjct 184048 TCAGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGAT 184107
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| || ||||| |||||||| ||||| |||||||||||| ||| || | || |||
Sbjct 184108 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 184167
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|| ||||| |||| || |||||||| | |||||
Sbjct 184168 AACATTCAAAAGGCGTCCACTCTTCATCTTGTGTT 184202
>seq293
Length=1771812
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|| ||||| || ||| | ||||| | | ||| || ||||| || ||| | ||||||
Sbjct 533871 AAGATGCAGATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTCGAGGCTGAACCC 533930
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| || || | | || | ||| || ||| ||||| ||||| | || |||
Sbjct 533931 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 533990
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| || ||| | |||||||| ||||| |||||||||||| ||| || | || |||
Sbjct 533991 CAGCAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTCTGTCTGACTAC 534050
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|| | ||| ||||| || |||||||| | |||||| || | || || ||
Sbjct 534051 AACACTCAAAAGGAGTCCACTCTTCATCTTGTGTTAAGACTTCGTGGTGG 534100
>seq182
Length=1985155
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|| ||||| || ||| | ||||| | ||||| || ||||| | | || | ||||||
Sbjct 1379205 AAGATGCAGATTTTCCTGAAAACCCTTACGGGGAAGACCATCATCCTTGAGGCTGAACCC 1379146
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| | || | | || | || || ||| ||||| ||||| | || |||
Sbjct 1379145 TCGGGTACAATAGAAAATGTACAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 1379086
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| || ||||| |||||||| ||||| |||||||||||| ||| || | || |||
Sbjct 1379085 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTTTGTCTGACTAC 1379026
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|| ||||| ||||| ||||||||||| | |||||
Sbjct 1379025 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 1378991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428248762814705
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |