Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq3973 352 3e-92
seq54 183 4e-41
seq512 168 8e-37
>seq3973
Length=164550
Score = 352 bits (390), Expect = 3e-92
Identities = 633/914 (69%), Gaps = 27/914 (3%)
Strand=Plus/Minus
Query 176340 CTAGCAGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGC 176399
|||| ||| ||| | | ||| | |||||| || |||||| | |||| || |||||
Sbjct 36205 CTAGGAGCCCAGTTCTTGCCCCCACTGTATTCCCTGGTGTTTGTGGTTGGTCTGCTGGGC 36146
Query 176400 AATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATG 176459
||| | | |||||| | || ||| | ||||| || | || | | || |||||
Sbjct 36145 AATGTGGTGGTGGTGGTGATCCTCACGAAATACAAGAGGCTCTGGATTATGACCAACATC 36086
Query 176460 TTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATG 176519
|| ||| | || ||||| || ||||||||||| ||||| || || || || |||||
Sbjct 36085 TTCCTGCTCAATTTGGCCATTTCTGACTTGCTCTTTCTATTCACCCTGGTGTTCTGGATT 36026
Query 176520 CACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGG 176579
|||||| || || |||| ||| |||||| |||| ||||||| || |||
Sbjct 36025 CACTATGCTGA---GTCGAATGAATGGGTTTTTGGCCCTTCCATGTGTAAGCTTCTCTCT 35969
Query 176580 GGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGAC 176639
|| | | ||||||| | ||||| || |||||| |||||||||||| || |||||
Sbjct 35968 GGGCTTTATTACATGGGCTTATACAGTGAGATCTTTTTCATCATCCTGCTGACCATAGAC 35909
Query 176640 AGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTG 176697
|||| || || | ||| |||| || ||| || ||| | || || || | ||
Sbjct 35908 CGGTACCTGGCCATCGTCCATGCCGTGTTTGCCCTTCGAGCCC--GGACTGTCACTTTTG 35851
Query 176698 GCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTT 176757
| | | || |||| |||||| ||||||||| | ||||||||||||||
Sbjct 35850 GTGTCATCACGAGTGTTCTCACCTGGGGCCTGGCAGGGCTAGCAGCCCTCCCTGAATTTA 35791
Query 176758 TCTTTCATGGACACCAAGATGA----CAATGGTAGGGTTCAGTGTGATC--CTTACTACC 176811
|||| |||| | |||| | || ||| || || || || || || ||||
Sbjct 35790 TCTTCCATGAATCCCAAAAAGAGGCCCAACAGT----TT--GTCTGCTCACCTATTTACC 35737
Query 176812 CAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGT 176870
|||| | | | || | |||| ||| ||| | | | ||| ||| | ||
Sbjct 35736 CAGA-AGACCAAGAAGACAGATGGAAGCGTTTCCATGCTCTGAGAATGAATATCCTGGGT 35678
Query 176871 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 176930
|||||| ||||||||||||| |||| ||||||||||| || |||||| | || ||| ||
Sbjct 35677 CTCATTCTGCCTCTGCTCATCATGGTTGTCTGCTACTCTGGAATTATTAAAACGCTGCTG 35618
Query 176931 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 176990
|| ||||||| ||||| ||||||||||||||| ||||||| |||||||||||||||| |
Sbjct 35617 AGATGCCCCAGTAAGAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTC 35558
Query 176991 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACC 177050
| ||| |||| ||||||||||||||| | || ||||| || | | ||||| | |
Sbjct 35557 TTTTTCATTTTCTGGACACCCTACAACCTGGTCCTCCTCCTCTTGGCTTTTCAAACGA-T 35499
Query 177051 CTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACA 177107
|||||| ||| | ||| ||| ||||| | ||||| |||| ||| | | ||
Sbjct 35498 CTTCTTTGAGACCAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCATGCAGGTGACG 35441
Query 177108 AAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAG 177167
| | |||||||| ||||| ||| ||||||| | ||||| || ||||| ||||||
Sbjct 35440 GAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCATCATCTATGCCTTCGTTGGGGAG 35381
Query 177168 AAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAG 177227
| ||| || | ||||| | ||||||||||| || ||||||||| |||||| ||||
Sbjct 35380 AGGTTCAGGAAGCACCTCTGCCACTTCTTCCGCAGGCACGTGGCCACCTACCTGGGCAAA 35321
Query 177228 TACATCCCCTTCCT 177241
|||||||| |||||
Sbjct 35320 TACATCCCATTCCT 35307
Score = 352 bits (390), Expect = 3e-92
Identities = 633/914 (69%), Gaps = 27/914 (3%)
Strand=Plus/Minus
Query 9454 CTAGCAGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGC 9513
|||| ||| ||| | | ||| | |||||| || |||||| | |||| || |||||
Sbjct 36205 CTAGGAGCCCAGTTCTTGCCCCCACTGTATTCCCTGGTGTTTGTGGTTGGTCTGCTGGGC 36146
Query 9514 AATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATG 9573
||| | | |||||| | || ||| | ||||| || | || | | || |||||
Sbjct 36145 AATGTGGTGGTGGTGGTGATCCTCACGAAATACAAGAGGCTCTGGATTATGACCAACATC 36086
Query 9574 TTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATG 9633
|| ||| | || ||||| || ||||||||||| ||||| || || || || |||||
Sbjct 36085 TTCCTGCTCAATTTGGCCATTTCTGACTTGCTCTTTCTATTCACCCTGGTGTTCTGGATT 36026
Query 9634 CACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGG 9693
|||||| || || |||| ||| |||||| |||| ||||||| || |||
Sbjct 36025 CACTATGCTGA---GTCGAATGAATGGGTTTTTGGCCCTTCCATGTGTAAGCTTCTCTCT 35969
Query 9694 GGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGAC 9753
|| | | ||||||| | ||||| || |||||| |||||||||||| || |||||
Sbjct 35968 GGGCTTTATTACATGGGCTTATACAGTGAGATCTTTTTCATCATCCTGCTGACCATAGAC 35909
Query 9754 AGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTG 9811
|||| || || | ||| |||| || ||| || ||| | || || || | ||
Sbjct 35908 CGGTACCTGGCCATCGTCCATGCCGTGTTTGCCCTTCGAGCCC--GGACTGTCACTTTTG 35851
Query 9812 GCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTT 9871
| | | || |||| |||||| ||||||||| | ||||||||||||||
Sbjct 35850 GTGTCATCACGAGTGTTCTCACCTGGGGCCTGGCAGGGCTAGCAGCCCTCCCTGAATTTA 35791
Query 9872 TCTTTCATGGACACCAAGATGA----CAATGGTAGGGTTCAGTGTGATC--CTTACTACC 9925
|||| |||| | |||| | || ||| || || || || || || ||||
Sbjct 35790 TCTTCCATGAATCCCAAAAAGAGGCCCAACAGT----TT--GTCTGCTCACCTATTTACC 35737
Query 9926 CAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGT 9984
|||| | | | || | |||| ||| ||| | | | ||| ||| | ||
Sbjct 35736 CAGA-AGACCAAGAAGACAGATGGAAGCGTTTCCATGCTCTGAGAATGAATATCCTGGGT 35678
Query 9985 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 10044
|||||| ||||||||||||| |||| ||||||||||| || |||||| | || ||| ||
Sbjct 35677 CTCATTCTGCCTCTGCTCATCATGGTTGTCTGCTACTCTGGAATTATTAAAACGCTGCTG 35618
Query 10045 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 10104
|| ||||||| ||||| ||||||||||||||| ||||||| |||||||||||||||| |
Sbjct 35617 AGATGCCCCAGTAAGAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTC 35558
Query 10105 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACC 10164
| ||| |||| ||||||||||||||| | || ||||| || | | ||||| | |
Sbjct 35557 TTTTTCATTTTCTGGACACCCTACAACCTGGTCCTCCTCCTCTTGGCTTTTCAAACGA-T 35499
Query 10165 CTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACA 10221
|||||| ||| | ||| ||| ||||| | ||||| |||| ||| | | ||
Sbjct 35498 CTTCTTTGAGACCAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCATGCAGGTGACG 35441
Query 10222 AAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAG 10281
| | |||||||| ||||| ||| ||||||| | ||||| || ||||| ||||||
Sbjct 35440 GAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCATCATCTATGCCTTCGTTGGGGAG 35381
Query 10282 AAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAG 10341
| ||| || | ||||| | ||||||||||| || ||||||||| |||||| ||||
Sbjct 35380 AGGTTCAGGAAGCACCTCTGCCACTTCTTCCGCAGGCACGTGGCCACCTACCTGGGCAAA 35321
Query 10342 TACATCCCCTTCCT 10355
|||||||| |||||
Sbjct 35320 TACATCCCATTCCT 35307
>seq54
Length=3562170
Score = 183 bits (202), Expect = 4e-41
Identities = 137/161 (85%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
||||| |||| ||| |||| ||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 3279519 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 3279578
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|| ||||| |||||||||||||| | |||||||||||| ||||| ||||| ||| | ||
Sbjct 3279579 ACACCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGACAGGACAGCTCGCCGTTCACC 3279638
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910
|||||||||||||| ||| ||||| || || ||||||||
Sbjct 3279639 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGGAGGGCCAT 3279679
>seq512
Length=1279947
Score = 168 bits (186), Expect = 8e-37
Identities = 133/157 (85%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
|| |||| |||||||| ||||||||| || ||||||||||||||||||||||| | |||
Sbjct 116168 CAACGCCGCAGCCTCAGCCTGAGGGTCTTCAGCTTTTCCCCCAGGGAGTTCACGTGTTCC 116109
Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201
|| || | || | ||||||||| |||||||||||||||||||||||||| || |||
Sbjct 116108 TTGA--TGTTTGGGTC-GTGGTTCTCAGCCTGGGGCATCACCTCCTCCAGGTAGAATTGG 116052
Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
|||||||| |||| ||| ||||| |||||||||||||
Sbjct 116051 ATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 116015
Score = 113 bits (124), Expect = 5e-20
Identities = 130/169 (77%), Gaps = 6/169 (4%)
Strand=Plus/Minus
Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356
||| || ||||| ||||||| |||||| || | |||||| |||||||||||||||||||
Sbjct 114881 AAAAAAAGTCTTCACCCTGCCGAAGGCAGCTCGGAGCTCTCGGAGCATGTGGGGCAGGCT 114822
Query 138357 GG-TGGGCAATGTAGGGCAGTCGTCCCCAGACTCACTGTCATAT-TTGTTGTC-GGCCCA 138413
|| |||| | || | ||||| |||| |||| || | | | ||| | | ||| |
Sbjct 114821 GGCTGGGAAGTG-GGTGCAGTTGTCCTCAGA--CAGGGCGCTCTGGTGTCGGCTGGCTCC 114765
Query 138414 CACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATG 138462
|||||||||||||| ||||||||||||||||||| || ||| ||||
Sbjct 114764 TACCCCGGCCAGGAGGACCAGGCAACACAGCAGCGCTGGGCTGGGCATG 114716
Score = 113 bits (124), Expect = 5e-20
Identities = 82/95 (86%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981
|||| |||||||||| | |||||||||| ||||||||||| |||||||||||||||||
Sbjct 118415 TCAGATTTTCATCTTCATTGTCATGTAGGTTTCTATGTAGTTGATGAAGATGTCAAACTC 118356
Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
|||||||| |||||||| ||| | || |||||||
Sbjct 118355 ACTCATGGCTTTGTAGACACCTCTCTCTTGGAGCT 118321
Score = 82.4 bits (90), Expect = 9e-11
Identities = 54/60 (90%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 138015 CTTGCTGAAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAA 138074
||| || ||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 117254 CTTACTAAAGGCACTCTTCACCTGCTCCACCGCCTTGCTCTTATTCTCACAGGGCAGAAA 117195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589953540332440
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