Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq3973 352 3e-92 seq54 183 4e-41 seq512 168 8e-37 >seq3973 Length=164550 Score = 352 bits (390), Expect = 3e-92 Identities = 633/914 (69%), Gaps = 27/914 (3%) Strand=Plus/Minus Query 176340 CTAGCAGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGC 176399 |||| ||| ||| | | ||| | |||||| || |||||| | |||| || ||||| Sbjct 36205 CTAGGAGCCCAGTTCTTGCCCCCACTGTATTCCCTGGTGTTTGTGGTTGGTCTGCTGGGC 36146 Query 176400 AATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATG 176459 ||| | | |||||| | || ||| | ||||| || | || | | || ||||| Sbjct 36145 AATGTGGTGGTGGTGGTGATCCTCACGAAATACAAGAGGCTCTGGATTATGACCAACATC 36086 Query 176460 TTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATG 176519 || ||| | || ||||| || ||||||||||| ||||| || || || || ||||| Sbjct 36085 TTCCTGCTCAATTTGGCCATTTCTGACTTGCTCTTTCTATTCACCCTGGTGTTCTGGATT 36026 Query 176520 CACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGG 176579 |||||| || || |||| ||| |||||| |||| ||||||| || ||| Sbjct 36025 CACTATGCTGA---GTCGAATGAATGGGTTTTTGGCCCTTCCATGTGTAAGCTTCTCTCT 35969 Query 176580 GGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGAC 176639 || | | ||||||| | ||||| || |||||| |||||||||||| || ||||| Sbjct 35968 GGGCTTTATTACATGGGCTTATACAGTGAGATCTTTTTCATCATCCTGCTGACCATAGAC 35909 Query 176640 AGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTG 176697 |||| || || | ||| |||| || ||| || ||| | || || || | || Sbjct 35908 CGGTACCTGGCCATCGTCCATGCCGTGTTTGCCCTTCGAGCCC--GGACTGTCACTTTTG 35851 Query 176698 GCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTT 176757 | | | || |||| |||||| ||||||||| | |||||||||||||| Sbjct 35850 GTGTCATCACGAGTGTTCTCACCTGGGGCCTGGCAGGGCTAGCAGCCCTCCCTGAATTTA 35791 Query 176758 TCTTTCATGGACACCAAGATGA----CAATGGTAGGGTTCAGTGTGATC--CTTACTACC 176811 |||| |||| | |||| | || ||| || || || || || || |||| Sbjct 35790 TCTTCCATGAATCCCAAAAAGAGGCCCAACAGT----TT--GTCTGCTCACCTATTTACC 35737 Query 176812 CAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGT 176870 |||| | | | || | |||| ||| ||| | | | ||| ||| | || Sbjct 35736 CAGA-AGACCAAGAAGACAGATGGAAGCGTTTCCATGCTCTGAGAATGAATATCCTGGGT 35678 Query 176871 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 176930 |||||| ||||||||||||| |||| ||||||||||| || |||||| | || ||| || Sbjct 35677 CTCATTCTGCCTCTGCTCATCATGGTTGTCTGCTACTCTGGAATTATTAAAACGCTGCTG 35618 Query 176931 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 176990 || ||||||| ||||| ||||||||||||||| ||||||| |||||||||||||||| | Sbjct 35617 AGATGCCCCAGTAAGAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTC 35558 Query 176991 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACC 177050 | ||| |||| ||||||||||||||| | || ||||| || | | ||||| | | Sbjct 35557 TTTTTCATTTTCTGGACACCCTACAACCTGGTCCTCCTCCTCTTGGCTTTTCAAACGA-T 35499 Query 177051 CTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACA 177107 |||||| ||| | ||| ||| ||||| | ||||| |||| ||| | | || Sbjct 35498 CTTCTTTGAGACCAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCATGCAGGTGACG 35441 Query 177108 AAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAG 177167 | | |||||||| ||||| ||| ||||||| | ||||| || ||||| |||||| Sbjct 35440 GAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCATCATCTATGCCTTCGTTGGGGAG 35381 Query 177168 AAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAG 177227 | ||| || | ||||| | ||||||||||| || ||||||||| |||||| |||| Sbjct 35380 AGGTTCAGGAAGCACCTCTGCCACTTCTTCCGCAGGCACGTGGCCACCTACCTGGGCAAA 35321 Query 177228 TACATCCCCTTCCT 177241 |||||||| ||||| Sbjct 35320 TACATCCCATTCCT 35307 Score = 352 bits (390), Expect = 3e-92 Identities = 633/914 (69%), Gaps = 27/914 (3%) Strand=Plus/Minus Query 9454 CTAGCAGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGC 9513 |||| ||| ||| | | ||| | |||||| || |||||| | |||| || ||||| Sbjct 36205 CTAGGAGCCCAGTTCTTGCCCCCACTGTATTCCCTGGTGTTTGTGGTTGGTCTGCTGGGC 36146 Query 9514 AATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATG 9573 ||| | | |||||| | || ||| | ||||| || | || | | || ||||| Sbjct 36145 AATGTGGTGGTGGTGGTGATCCTCACGAAATACAAGAGGCTCTGGATTATGACCAACATC 36086 Query 9574 TTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATG 9633 || ||| | || ||||| || ||||||||||| ||||| || || || || ||||| Sbjct 36085 TTCCTGCTCAATTTGGCCATTTCTGACTTGCTCTTTCTATTCACCCTGGTGTTCTGGATT 36026 Query 9634 CACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGG 9693 |||||| || || |||| ||| |||||| |||| ||||||| || ||| Sbjct 36025 CACTATGCTGA---GTCGAATGAATGGGTTTTTGGCCCTTCCATGTGTAAGCTTCTCTCT 35969 Query 9694 GGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGAC 9753 || | | ||||||| | ||||| || |||||| |||||||||||| || ||||| Sbjct 35968 GGGCTTTATTACATGGGCTTATACAGTGAGATCTTTTTCATCATCCTGCTGACCATAGAC 35909 Query 9754 AGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTG 9811 |||| || || | ||| |||| || ||| || ||| | || || || | || Sbjct 35908 CGGTACCTGGCCATCGTCCATGCCGTGTTTGCCCTTCGAGCCC--GGACTGTCACTTTTG 35851 Query 9812 GCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTT 9871 | | | || |||| |||||| ||||||||| | |||||||||||||| Sbjct 35850 GTGTCATCACGAGTGTTCTCACCTGGGGCCTGGCAGGGCTAGCAGCCCTCCCTGAATTTA 35791 Query 9872 TCTTTCATGGACACCAAGATGA----CAATGGTAGGGTTCAGTGTGATC--CTTACTACC 9925 |||| |||| | |||| | || ||| || || || || || || |||| Sbjct 35790 TCTTCCATGAATCCCAAAAAGAGGCCCAACAGT----TT--GTCTGCTCACCTATTTACC 35737 Query 9926 CAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGT 9984 |||| | | | || | |||| ||| ||| | | | ||| ||| | || Sbjct 35736 CAGA-AGACCAAGAAGACAGATGGAAGCGTTTCCATGCTCTGAGAATGAATATCCTGGGT 35678 Query 9985 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 10044 |||||| ||||||||||||| |||| ||||||||||| || |||||| | || ||| || Sbjct 35677 CTCATTCTGCCTCTGCTCATCATGGTTGTCTGCTACTCTGGAATTATTAAAACGCTGCTG 35618 Query 10045 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 10104 || ||||||| ||||| ||||||||||||||| ||||||| |||||||||||||||| | Sbjct 35617 AGATGCCCCAGTAAGAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTC 35558 Query 10105 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACC 10164 | ||| |||| ||||||||||||||| | || ||||| || | | ||||| | | Sbjct 35557 TTTTTCATTTTCTGGACACCCTACAACCTGGTCCTCCTCCTCTTGGCTTTTCAAACGA-T 35499 Query 10165 CTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACA 10221 |||||| ||| | ||| ||| ||||| | ||||| |||| ||| | | || Sbjct 35498 CTTCTTTGAGACCAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCATGCAGGTGACG 35441 Query 10222 AAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAG 10281 | | |||||||| ||||| ||| ||||||| | ||||| || ||||| |||||| Sbjct 35440 GAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCATCATCTATGCCTTCGTTGGGGAG 35381 Query 10282 AAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAG 10341 | ||| || | ||||| | ||||||||||| || ||||||||| |||||| |||| Sbjct 35380 AGGTTCAGGAAGCACCTCTGCCACTTCTTCCGCAGGCACGTGGCCACCTACCTGGGCAAA 35321 Query 10342 TACATCCCCTTCCT 10355 |||||||| ||||| Sbjct 35320 TACATCCCATTCCT 35307 >seq54 Length=3562170 Score = 183 bits (202), Expect = 4e-41 Identities = 137/161 (85%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| |||| ||||||||| ||||||| ||||||||| |||||||||||| Sbjct 3279519 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 3279578 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||||||||| | |||||||||||| ||||| ||||| ||| | || Sbjct 3279579 ACACCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGACAGGACAGCTCGCCGTTCACC 3279638 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| ||| ||||| || || |||||||| Sbjct 3279639 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGGAGGGCCAT 3279679 >seq512 Length=1279947 Score = 168 bits (186), Expect = 8e-37 Identities = 133/157 (85%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 || |||| |||||||| ||||||||| || ||||||||||||||||||||||| | ||| Sbjct 116168 CAACGCCGCAGCCTCAGCCTGAGGGTCTTCAGCTTTTCCCCCAGGGAGTTCACGTGTTCC 116109 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || || | || | ||||||||| |||||||||||||||||||||||||| || ||| Sbjct 116108 TTGA--TGTTTGGGTC-GTGGTTCTCAGCCTGGGGCATCACCTCCTCCAGGTAGAATTGG 116052 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 116051 ATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 116015 Score = 113 bits (124), Expect = 5e-20 Identities = 130/169 (77%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356 ||| || ||||| ||||||| |||||| || | |||||| ||||||||||||||||||| Sbjct 114881 AAAAAAAGTCTTCACCCTGCCGAAGGCAGCTCGGAGCTCTCGGAGCATGTGGGGCAGGCT 114822 Query 138357 GG-TGGGCAATGTAGGGCAGTCGTCCCCAGACTCACTGTCATAT-TTGTTGTC-GGCCCA 138413 || |||| | || | ||||| |||| |||| || | | | ||| | | ||| | Sbjct 114821 GGCTGGGAAGTG-GGTGCAGTTGTCCTCAGA--CAGGGCGCTCTGGTGTCGGCTGGCTCC 114765 Query 138414 CACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATG 138462 |||||||||||||| ||||||||||||||||||| || ||| |||| Sbjct 114764 TACCCCGGCCAGGAGGACCAGGCAACACAGCAGCGCTGGGCTGGGCATG 114716 Score = 113 bits (124), Expect = 5e-20 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 |||| |||||||||| | |||||||||| ||||||||||| ||||||||||||||||| Sbjct 118415 TCAGATTTTCATCTTCATTGTCATGTAGGTTTCTATGTAGTTGATGAAGATGTCAAACTC 118356 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||| |||||||| ||| | || ||||||| Sbjct 118355 ACTCATGGCTTTGTAGACACCTCTCTCTTGGAGCT 118321 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 138015 CTTGCTGAAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAA 138074 ||| || ||||| ||||||||||||||||| ||||||||||||||||| |||||||| || Sbjct 117254 CTTACTAAAGGCACTCTTCACCTGCTCCACCGCCTTGCTCTTATTCTCACAGGGCAGAAA 117195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589953540332440