Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq5313 277 2e-69
seq202 161 1e-34
seq143 145 9e-30
seq1333 138 1e-27
seq184 118 1e-21
seq653 96.9 4e-15
seq2 93.3 5e-14
>seq5313
Length=66686
Score = 277 bits (306), Expect = 2e-69
Identities = 264/338 (78%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| |||||||| ||||| | | ||| | ||||| ||||||||||||||
Sbjct 61276 AGCAGGGCTTCGATGTCAGGCTCGATATTGATGGTGGGAAAGCGGCGGCTGTACCTGCGC 61335
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| ||| || || | ||||||| ||||||||| ||||||||||| | ||||||||||
Sbjct 61336 ACAGGCACACCATCCGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCGATGTCGTTGCGG 61395
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| |||||||||| |||| || ||||||| ||| ||||| | |||||| |||
Sbjct 61396 CACACGGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCAGTGGCGTCGTCACTA 61455
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|| || ||||||| ||| || |||||||||||||| || || ||| || ||||| |||
Sbjct 61456 GGGGCTGGCAGGGACTCCCGCAGGAAGGCGAAGAGGGGGTGCGCCTGCGCGCCGTTCACC 61515
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
||||||||||| || ||| | ||||| |||||||| ||| ||||| ||||||| |||
Sbjct 61516 TCGCACTTCTCAAAAAGCGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGGACGTACTTG 61575
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
|||||| || |||||| | |||| ||||| |||||
Sbjct 61576 AGGGAATTCAGGATCTCTTCGTTCTTAGCGTTCTCCTG 61613
Score = 187 bits (206), Expect = 3e-42
Identities = 168/211 (80%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || ||||||||||| || ||||| || ||||| ||||| ||||| | || ||||
Sbjct 61829 CCTGATGCCCGAACTGGTTGCATGGGAAGCCGAGCACAACCAGGCCCCGGGGCCCGAGGC 61888
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| |
Sbjct 61889 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 61948
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
| ||||| ||||||| ||| |||||| | | | || | ||||| || || || ||||
Sbjct 61949 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAACCCAGGCTCAGGGGCTCCCCGCCGG 62008
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601
| |||||| || |||||||| ||||| ||
Sbjct 62009 CCAGCGGGCGCGCAGAGAAGGCATACACGGA 62039
>seq202
Length=2068787
Score = 161 bits (178), Expect = 1e-34
Identities = 361/544 (66%), Gaps = 50/544 (9%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCA-GCGGTGGCTGTACCTGCG 83115
|||||||| |||||||| ||||||| | | |||| | || | ||||||| |||||
Sbjct 965518 AGCAGGGCTTCGATGTCAGGCTCCATATTCGATGGCTGGAAAGCAGCGGCTGTAGCTGCG 965577
Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175
||| ||| || |||| |||| |||| |||| | | ||||||||
Sbjct 965578 CACAGGCACACCATCAGG--------------TCTCAAAGTCCCAGACGATGTCGTTGCA 965623
Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235
|| ||| ||| || || |||| || ||||||| ||| ||||| | ||| ||||
Sbjct 965624 GCCCACCAGAGCCCGGGTGATGAACTTGGGGTCGGTCATGAGCGCG---ATGGCGTC--- 965677
Query 83236 AGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC--CGTTG 83293
|| ||| ||||||| || || ||| ||||| | ||
Sbjct 965678 -----------------CT------AAGACGAAGAGGGGGTGCGCC--TGCACGCCATTC 965712
Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGG-ACGTG 83352
||||||| ||| ||| | || | ||| |||| || ||| | | || || |||||
Sbjct 965713 ACCTCGCCCTTTTCGGAAGGCGAGAGGTTGGGCTGGA-GCCAGCCGCGGGCTGGGACGTG 965771
Query 83353 CTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACA 83412
|| |||||| || |||||| | | | |||||||||||| || | ||| |||| |
Sbjct 965772 CTCGAGGGAATTCAGGATCTCTTCGCTTTTGGCGTTTTCCTGATGCCTGAAATGGTGGCG 965831
Query 83413 CGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTG 83472
|||| || ||||| ||||| ||| | | | |||||||||||||||| |||||||||
Sbjct 965832 GCGGAAGCCGAGCACGACCAGGCCCTGGGGCCTGAGGCGCCGCTGCAGCTGGTTCATCTG 965891
Query 83473 AGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCG 83532
|| || |||| |||| | |||||||| || || || |||| || ||||| |||
Sbjct 965892 GGTATAATCCCAGACCTTTGGGCCTCAGAGCGAAGCCACATTCTGGAAGAGCAGCACCTT 965951
Query 83533 GCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGC 83592
|||||| | | | || | ||||| || || || |||| ||||| || || |||||
Sbjct 965952 GCCCCGCAGGCAACCCAGGCTCATGGGCTCCCCGCCGGCTGGTGGGCGCGCAGACAAGGC 966011
Query 83593 GTAC 83596
| ||
Sbjct 966012 GGAC 966015
>seq143
Length=2374980
Score = 145 bits (160), Expect = 9e-30
Identities = 283/413 (69%), Gaps = 10/413 (2%)
Strand=Plus/Minus
Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185
||||| | ||| || ||||||| | ||||||||| | ||| | | || ||||| ||
Sbjct 1715099 CCGTCTGGGCCCTTCAGGAACTTCCCCAAGTTCCAGCCGACGCCCTCGCCCCACACCTGA 1715040
Query 83186 GACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGC 83245
||||||| |||||| |||| | || ||||| | || || || ||||| ||
Sbjct 1715039 GACCAGG---TGAGCTTAGGGTGGGCCAGGAGCGCAGTGGCGTGCTCCCTGGGCGCGGGG 1714983
Query 83246 AGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGC--ACCGTTGACCTCGCACT 83303
|| || || | ||| | || | |||| | || ||||| || | | ||| | |
Sbjct 1714982 AGAGCTTCCTGCAGGCGGAGGAGGGGCGG--GCGCACTTGCGCACTGCTTACCAGGTGAT 1714925
Query 83304 TCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAG 83363
|||| |||||| |||| |||||||| ||| | || | | | | | || |
Sbjct 1714924 TCTCAAAGAGCCGGAAGTCGGGCTCGAACCCGCCGCGGGGTCCTATGGTCCTGAGAGTTT 1714865
Query 83364 GCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAA 83423
|| |||||| || |||| |||||| ||||| || | | |||| || |||||||| || |
Sbjct 1714864 -CAGGATCTCCGCCTTCTTGGCGTTCTCCTGATGCCGGCACTGCTTGCACGGGAAGCCGA 1714806
Query 83424 GCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCC 83483
||| ||||| ||||| || | |||||||||||||||| ||||| || |||| || ||
Sbjct 1714805 GCAGGACCAGGCCCCGGGC--CGAGGCGCCGCTGCAGCTTGTTCACTTGGGTGTCCTGCC 1714748
Query 83484 GGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536
||| | | | | |||||| ||||| || | ||| |||||| ||| ||||
Sbjct 1714747 GGAGCTTCGTGCGTCAGAGCGACGCCACCTGGTCGGTGAGCAGCACCTTGCCC 1714695
>seq1333
Length=667444
Score = 138 bits (152), Expect = 1e-27
Identities = 196/268 (73%), Gaps = 6/268 (2%)
Strand=Plus/Plus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| |||
Sbjct 449565 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 449623
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || | || || |||||||| || | || ||||||| || ||| | |||||||
Sbjct 449624 TGGTGCACCTCTTCCCCGAGCTCTTCACGCCCGACAACCTGCGCAAGCAGTACAACTGCA 449683
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| |||| || |||||| ||| | | | |||| |||||
Sbjct 449684 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAGGCTCATCCGCCACTAC 449742
Query 50588 GTGCAGTTGCTGCACCCG-GCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646
|||||| ||||| ||||| ||| | | ||||| ||||| |||| ||||| |||
Sbjct 449743 GTGCAGCTGCTGTACCCGCGCGCCAAG-AACGACCGCGTCTGGACGCTGGAGTTCGTGGG 449801
Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGC 50674
||||||||||||||||||||||||
Sbjct 449802 CAAGCTGGACGAGCGCTGCCGGCGCCGC 449829
>seq184
Length=2053070
Score = 118 bits (130), Expect = 1e-21
Identities = 255/375 (68%), Gaps = 20/375 (5%)
Strand=Plus/Minus
Query 83110 CCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTC 83169
||||| ||| ||| || || | ||||||| || |||||| ||||||||||| || |
Sbjct 439175 CCTGCTCACAGGCACACCATCTGGGCCCACCAGGACCTTCTCAAAGTTCCAGGCAACATT 439116
Query 83170 GTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC---GTGCTCAT 83226
|| || ||||| |||||| | | ||| || ||||| | ||| |||| ||| |||
Sbjct 439115 GTGGCAGCACATCCTAGACCAAGTATTGAACTTGGGGTTGGTCATGAGCACAGTG-GCAT 439057
Query 83227 GTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGC 83286
| || || || || | ||| ||||| | || |||| |||| | || ||| || |
Sbjct 439056 TT--TCACTGGGGGCGGACAGAGCCTCCTGCAGTAAGGTGAAGGGGGGGTGTACCTGCGT 438999
Query 83287 ACCGTTGACCTCGCACTTCTC-GAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCC----- 83340
|| ||| ||||| |||| ||| |||| | | || | ||||| || | || |
Sbjct 438998 ACTGTTCACCTCACACTCCTCAGAAGTG--TGCAGGTTGGCTCCAA--CTATCACTTGGG 438943
Query 83341 ---AGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTG 83397
|| ||| || ||| |||||| || |||||| |||| ||| || ||||| ||
Sbjct 438942 TGGGGGTGGGATGTACTTGAGGGAATTCAGGATCTCTTTCTTCTTGGCATTCTCCTGATG 438883
Query 83398 ACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTG 83457
| |||||| || | ||||| || || ||||| ||| | || || || | | ||||
Sbjct 438882 TCGGAACTGTTTGCCTGGGAAGCCGAGTTTGACCAGGCCCTGGGC-CCAAGACACTGCTG 438824
Query 83458 CAGCTCGTTCATCTG 83472
|||||| ||||||||
Sbjct 438823 CAGCTCCTTCATCTG 438809
>seq653
Length=1047930
Score = 96.9 bits (106), Expect = 4e-15
Identities = 216/322 (67%), Gaps = 27/322 (8%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCA-GCGGTGGCTGTACCTGCG 83115
|||||||| | || ||| |||| | | | | || |||| | |||| | ||| || ||||
Sbjct 661465 AGCAGGGCTTTGAAGTCAGGCTGGATGTCGATGG-CTGGAACGCGGGGCCTGGAC-TGCG 661522
Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175
||| ||| |||||| | ||||||| || |||||||| ||||||||||
Sbjct 661523 CACAGGCACGCCGTCTGGGCCCACCATGAT---------GTTCCAGGTGACGTCGTTGCA 661573
Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCG----TGCTCATGTCGT 83231
||| ||||||||||||| |||| | ||||| | || ||||| || || ||
Sbjct 661574 GCAAACTGGAGACCAGGTGATGAATTTGGGGTTGGTCCTGAGCGCAGTGGCACA----GT 661629
Query 83232 CGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGT 83291
| || || || ||||| | ||||||| |||||| | || || || || |
Sbjct 661630 CACTGGGGGCAGGCAGAAC-------AGGAAGGTGAAGAGGAGTTGCACCTGCGCGCCCT 661682
Query 83292 TGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGT 83351
| |||||||||||||| || || | || | |||||||| || | || || ||
Sbjct 661683 TCACCTCGCACTTCTCAAAAAGGACGGAGGTGGGCTCGAACCCAACGCTGGGTTAGATGT 661742
Query 83352 GCTTCAGGGAAGGCAAGATCTC 83373
|||| |||||| || ||| ||
Sbjct 661743 GCTTGAGGGAATTCAGGATGTC 661764
>seq2
Length=10958939
Score = 93.3 bits (102), Expect = 5e-14
Identities = 190/274 (69%), Gaps = 19/274 (7%)
Strand=Plus/Minus
Query 83050 CGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTA 83109
||||| | |||||| | ||||| ||||| ||| ||| | || ||||||||||
Sbjct 8483650 CGGGGTCATCAGGGCTTTAATGTCAGGCTCAGTGGCAGTGGTTGGAAAGTGGTGGCTGTA 8483591
Query 83110 CCTGCGCACG-------GGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGG 83162
||||| | || ||| || || | ||| ||| || ||||| |||| ||||||
Sbjct 8483590 CCTGCAC-CGTCTGGGTGGCAGACCATCTGGGCCC-CCAGGAGCTTCTTGAAGCTCCAGG 8483533
Query 83163 CCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC---G 83219
| | | | |||| |||||||||| || || |||| || |||| | ||| |||| |
Sbjct 8483532 CGATGCCATTGCCTCACACTGGAGTCCCGGTGATGAACT-TGGGTTGGTCATGAGCACAG 8483474
Query 83220 TGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTG 83279
|| || ||||| || || || ||||| || || | |||||||| ||||| || |||
Sbjct 8483473 TG-GCA--TCGTCACTGGGGGCAGGCAGAGCTTCCTGGAGGAAGGCAAAGAG-GGGGGTG 8483418
Query 83280 CCCTTG--CACCGTTGACCTCGCACTTCTCGAAG 83311
| | || |||| | ||||| |||||||| |||
Sbjct 8483417 CGCCTGCACACCATCCACCTCACACTTCTCAAAG 8483384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608669629958440
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