Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq5313 277 2e-69 seq202 161 1e-34 seq143 145 9e-30 seq1333 138 1e-27 seq184 118 1e-21 seq653 96.9 4e-15 seq2 93.3 5e-14 >seq5313 Length=66686 Score = 277 bits (306), Expect = 2e-69 Identities = 264/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | ||| | ||||| |||||||||||||| Sbjct 61276 AGCAGGGCTTCGATGTCAGGCTCGATATTGATGGTGGGAAAGCGGCGGCTGTACCTGCGC 61335 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||||| ||||||||| ||||||||||| | |||||||||| Sbjct 61336 ACAGGCACACCATCCGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCGATGTCGTTGCGG 61395 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || ||||||| ||| ||||| | |||||| ||| Sbjct 61396 CACACGGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCAGTGGCGTCGTCACTA 61455 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||||| ||| || |||||||||||||| || || ||| || ||||| ||| Sbjct 61456 GGGGCTGGCAGGGACTCCCGCAGGAAGGCGAAGAGGGGGTGCGCCTGCGCGCCGTTCACC 61515 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| || ||| | ||||| |||||||| ||| ||||| ||||||| ||| Sbjct 61516 TCGCACTTCTCAAAAAGCGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGGACGTACTTG 61575 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||||| || |||||| | |||| ||||| ||||| Sbjct 61576 AGGGAATTCAGGATCTCTTCGTTCTTAGCGTTCTCCTG 61613 Score = 187 bits (206), Expect = 3e-42 Identities = 168/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| || ||||| || ||||| ||||| ||||| | || |||| Sbjct 61829 CCTGATGCCCGAACTGGTTGCATGGGAAGCCGAGCACAACCAGGCCCCGGGGCCCGAGGC 61888 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 61889 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 61948 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | | || | ||||| || || || |||| Sbjct 61949 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAACCCAGGCTCAGGGGCTCCCCGCCGG 62008 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || |||||||| ||||| || Sbjct 62009 CCAGCGGGCGCGCAGAGAAGGCATACACGGA 62039 >seq202 Length=2068787 Score = 161 bits (178), Expect = 1e-34 Identities = 361/544 (66%), Gaps = 50/544 (9%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCA-GCGGTGGCTGTACCTGCG 83115 |||||||| |||||||| ||||||| | | |||| | || | ||||||| ||||| Sbjct 965518 AGCAGGGCTTCGATGTCAGGCTCCATATTCGATGGCTGGAAAGCAGCGGCTGTAGCTGCG 965577 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 ||| ||| || |||| |||| |||| |||| | | |||||||| Sbjct 965578 CACAGGCACACCATCAGG--------------TCTCAAAGTCCCAGACGATGTCGTTGCA 965623 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 || ||| ||| || || |||| || ||||||| ||| ||||| | ||| |||| Sbjct 965624 GCCCACCAGAGCCCGGGTGATGAACTTGGGGTCGGTCATGAGCGCG---ATGGCGTC--- 965677 Query 83236 AGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC--CGTTG 83293 || ||| ||||||| || || ||| ||||| | || Sbjct 965678 -----------------CT------AAGACGAAGAGGGGGTGCGCC--TGCACGCCATTC 965712 Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGG-ACGTG 83352 ||||||| ||| ||| | || | ||| |||| || ||| | | || || ||||| Sbjct 965713 ACCTCGCCCTTTTCGGAAGGCGAGAGGTTGGGCTGGA-GCCAGCCGCGGGCTGGGACGTG 965771 Query 83353 CTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACA 83412 || |||||| || |||||| | | | |||||||||||| || | ||| |||| | Sbjct 965772 CTCGAGGGAATTCAGGATCTCTTCGCTTTTGGCGTTTTCCTGATGCCTGAAATGGTGGCG 965831 Query 83413 CGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTG 83472 |||| || ||||| ||||| ||| | | | |||||||||||||||| ||||||||| Sbjct 965832 GCGGAAGCCGAGCACGACCAGGCCCTGGGGCCTGAGGCGCCGCTGCAGCTGGTTCATCTG 965891 Query 83473 AGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCG 83532 || || |||| |||| | |||||||| || || || |||| || ||||| ||| Sbjct 965892 GGTATAATCCCAGACCTTTGGGCCTCAGAGCGAAGCCACATTCTGGAAGAGCAGCACCTT 965951 Query 83533 GCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGC 83592 |||||| | | | || | ||||| || || || |||| ||||| || || ||||| Sbjct 965952 GCCCCGCAGGCAACCCAGGCTCATGGGCTCCCCGCCGGCTGGTGGGCGCGCAGACAAGGC 966011 Query 83593 GTAC 83596 | || Sbjct 966012 GGAC 966015 >seq143 Length=2374980 Score = 145 bits (160), Expect = 9e-30 Identities = 283/413 (69%), Gaps = 10/413 (2%) Strand=Plus/Minus Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185 ||||| | ||| || ||||||| | ||||||||| | ||| | | || ||||| || Sbjct 1715099 CCGTCTGGGCCCTTCAGGAACTTCCCCAAGTTCCAGCCGACGCCCTCGCCCCACACCTGA 1715040 Query 83186 GACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGC 83245 ||||||| |||||| |||| | || ||||| | || || || ||||| || Sbjct 1715039 GACCAGG---TGAGCTTAGGGTGGGCCAGGAGCGCAGTGGCGTGCTCCCTGGGCGCGGGG 1714983 Query 83246 AGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGC--ACCGTTGACCTCGCACT 83303 || || || | ||| | || | |||| | || ||||| || | | ||| | | Sbjct 1714982 AGAGCTTCCTGCAGGCGGAGGAGGGGCGG--GCGCACTTGCGCACTGCTTACCAGGTGAT 1714925 Query 83304 TCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAG 83363 |||| |||||| |||| |||||||| ||| | || | | | | | || | Sbjct 1714924 TCTCAAAGAGCCGGAAGTCGGGCTCGAACCCGCCGCGGGGTCCTATGGTCCTGAGAGTTT 1714865 Query 83364 GCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAA 83423 || |||||| || |||| |||||| ||||| || | | |||| || |||||||| || | Sbjct 1714864 -CAGGATCTCCGCCTTCTTGGCGTTCTCCTGATGCCGGCACTGCTTGCACGGGAAGCCGA 1714806 Query 83424 GCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCC 83483 ||| ||||| ||||| || | |||||||||||||||| ||||| || |||| || || Sbjct 1714805 GCAGGACCAGGCCCCGGGC--CGAGGCGCCGCTGCAGCTTGTTCACTTGGGTGTCCTGCC 1714748 Query 83484 GGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 ||| | | | | |||||| ||||| || | ||| |||||| ||| |||| Sbjct 1714747 GGAGCTTCGTGCGTCAGAGCGACGCCACCTGGTCGGTGAGCAGCACCTTGCCC 1714695 >seq1333 Length=667444 Score = 138 bits (152), Expect = 1e-27 Identities = 196/268 (73%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 449565 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 449623 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || | || ||||||| || ||| | ||||||| Sbjct 449624 TGGTGCACCTCTTCCCCGAGCTCTTCACGCCCGACAACCTGCGCAAGCAGTACAACTGCA 449683 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | | |||| ||||| Sbjct 449684 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAGGCTCATCCGCCACTAC 449742 Query 50588 GTGCAGTTGCTGCACCCG-GCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646 |||||| ||||| ||||| ||| | | ||||| ||||| |||| ||||| ||| Sbjct 449743 GTGCAGCTGCTGTACCCGCGCGCCAAG-AACGACCGCGTCTGGACGCTGGAGTTCGTGGG 449801 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGC 50674 |||||||||||||||||||||||| Sbjct 449802 CAAGCTGGACGAGCGCTGCCGGCGCCGC 449829 >seq184 Length=2053070 Score = 118 bits (130), Expect = 1e-21 Identities = 255/375 (68%), Gaps = 20/375 (5%) Strand=Plus/Minus Query 83110 CCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTC 83169 ||||| ||| ||| || || | ||||||| || |||||| ||||||||||| || | Sbjct 439175 CCTGCTCACAGGCACACCATCTGGGCCCACCAGGACCTTCTCAAAGTTCCAGGCAACATT 439116 Query 83170 GTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC---GTGCTCAT 83226 || || ||||| |||||| | | ||| || ||||| | ||| |||| ||| ||| Sbjct 439115 GTGGCAGCACATCCTAGACCAAGTATTGAACTTGGGGTTGGTCATGAGCACAGTG-GCAT 439057 Query 83227 GTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGC 83286 | || || || || | ||| ||||| | || |||| |||| | || ||| || | Sbjct 439056 TT--TCACTGGGGGCGGACAGAGCCTCCTGCAGTAAGGTGAAGGGGGGGTGTACCTGCGT 438999 Query 83287 ACCGTTGACCTCGCACTTCTC-GAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCC----- 83340 || ||| ||||| |||| ||| |||| | | || | ||||| || | || | Sbjct 438998 ACTGTTCACCTCACACTCCTCAGAAGTG--TGCAGGTTGGCTCCAA--CTATCACTTGGG 438943 Query 83341 ---AGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTG 83397 || ||| || ||| |||||| || |||||| |||| ||| || ||||| || Sbjct 438942 TGGGGGTGGGATGTACTTGAGGGAATTCAGGATCTCTTTCTTCTTGGCATTCTCCTGATG 438883 Query 83398 ACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTG 83457 | |||||| || | ||||| || || ||||| ||| | || || || | | |||| Sbjct 438882 TCGGAACTGTTTGCCTGGGAAGCCGAGTTTGACCAGGCCCTGGGC-CCAAGACACTGCTG 438824 Query 83458 CAGCTCGTTCATCTG 83472 |||||| |||||||| Sbjct 438823 CAGCTCCTTCATCTG 438809 >seq653 Length=1047930 Score = 96.9 bits (106), Expect = 4e-15 Identities = 216/322 (67%), Gaps = 27/322 (8%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCA-GCGGTGGCTGTACCTGCG 83115 |||||||| | || ||| |||| | | | | || |||| | |||| | ||| || |||| Sbjct 661465 AGCAGGGCTTTGAAGTCAGGCTGGATGTCGATGG-CTGGAACGCGGGGCCTGGAC-TGCG 661522 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 ||| ||| |||||| | ||||||| || |||||||| |||||||||| Sbjct 661523 CACAGGCACGCCGTCTGGGCCCACCATGAT---------GTTCCAGGTGACGTCGTTGCA 661573 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCG----TGCTCATGTCGT 83231 ||| ||||||||||||| |||| | ||||| | || ||||| || || || Sbjct 661574 GCAAACTGGAGACCAGGTGATGAATTTGGGGTTGGTCCTGAGCGCAGTGGCACA----GT 661629 Query 83232 CGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGT 83291 | || || || ||||| | ||||||| |||||| | || || || || | Sbjct 661630 CACTGGGGGCAGGCAGAAC-------AGGAAGGTGAAGAGGAGTTGCACCTGCGCGCCCT 661682 Query 83292 TGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGT 83351 | |||||||||||||| || || | || | |||||||| || | || || || Sbjct 661683 TCACCTCGCACTTCTCAAAAAGGACGGAGGTGGGCTCGAACCCAACGCTGGGTTAGATGT 661742 Query 83352 GCTTCAGGGAAGGCAAGATCTC 83373 |||| |||||| || ||| || Sbjct 661743 GCTTGAGGGAATTCAGGATGTC 661764 >seq2 Length=10958939 Score = 93.3 bits (102), Expect = 5e-14 Identities = 190/274 (69%), Gaps = 19/274 (7%) Strand=Plus/Minus Query 83050 CGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTA 83109 ||||| | |||||| | ||||| ||||| ||| ||| | || |||||||||| Sbjct 8483650 CGGGGTCATCAGGGCTTTAATGTCAGGCTCAGTGGCAGTGGTTGGAAAGTGGTGGCTGTA 8483591 Query 83110 CCTGCGCACG-------GGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGG 83162 ||||| | || ||| || || | ||| ||| || ||||| |||| |||||| Sbjct 8483590 CCTGCAC-CGTCTGGGTGGCAGACCATCTGGGCCC-CCAGGAGCTTCTTGAAGCTCCAGG 8483533 Query 83163 CCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC---G 83219 | | | | |||| |||||||||| || || |||| || |||| | ||| |||| | Sbjct 8483532 CGATGCCATTGCCTCACACTGGAGTCCCGGTGATGAACT-TGGGTTGGTCATGAGCACAG 8483474 Query 83220 TGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTG 83279 || || ||||| || || || ||||| || || | |||||||| ||||| || ||| Sbjct 8483473 TG-GCA--TCGTCACTGGGGGCAGGCAGAGCTTCCTGGAGGAAGGCAAAGAG-GGGGGTG 8483418 Query 83280 CCCTTG--CACCGTTGACCTCGCACTTCTCGAAG 83311 | | || |||| | ||||| |||||||| ||| Sbjct 8483417 CGCCTGCACACCATCCACCTCACACTTCTCAAAG 8483384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608669629958440