Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq541 116 3e-21 seq377 116 3e-21 seq788 113 4e-20 seq203 95.1 1e-14 seq322 89.7 4e-13 seq1818 84.2 2e-11 seq975 84.2 2e-11 seq1526 82.4 6e-11 >seq541 Length=1170729 Score = 116 bits (128), Expect = 3e-21 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| || | ||| ||||| || || ||||| || || | | Sbjct 610509 CCCCTC--AGACAGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAA 610566 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || ||||||||||| ||| | Sbjct 610567 GAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGA 610626 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| || || || |||||| ||||| | ||| || |||| ||||||| | Sbjct 610627 TGCCCTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCT 610686 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| |||||||||||||| | || || || || || |||||||||| Sbjct 610687 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 610737 >seq377 Length=1354867 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || |||||||| || | || || || | || Sbjct 824418 AGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATCT 824477 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | ||| || || || Sbjct 824478 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 824537 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| |||| || |||||| Sbjct 824538 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGGTC 824597 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||||| || || || || || |||||||||| Sbjct 824598 TTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTTGA 824634 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||| ||||| || || || || || || | || || || | || Sbjct 824189 GAGAACCAGGTGGAGAGTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATC 824248 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||| ||| |||| ||| | ||||| ||||||||||| ||| | ||| || || | Sbjct 824249 TTCCATCTGCTTGCTGGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATA 824308 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||| || ||||| | | | || |||| ||||||| |||| ||| ||||| Sbjct 824309 TTGGATATTCGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 824368 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||||| || || || || || ||||| Sbjct 824369 CTTGCCGGTTAGGGTCTTCACGAAGATCTGCAT 824401 >seq788 Length=1000743 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| |||||||| || || || |||||||| | ||| || || | || Sbjct 445012 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 445071 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||||||| ||| || | ||||||||| || | ||| |||||||| Sbjct 445072 TCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 445131 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | | | || |||| |||||| || | ||| |||||| Sbjct 445132 TGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 445191 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 445192 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq203 Length=1941613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 20965 GCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCT 21024 |||||| |||| |||||||| | || || |||||||| | |||||| || | | | Sbjct 1855973 GCACCAAGTGCAGGGTGGACTC--TCTGGATATTATAGTCTGACAGGGTACGGCCAGCTT 1856030 Query 21025 CCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGG 21084 ||||||||||||||||| |||| || | ||||||||| || | | | |||||||| Sbjct 1856031 CCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTT 1856090 Query 21085 CGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCT 21144 ||| || ||| || | | | || |||| |||||| || | ||| ||| ||| Sbjct 1856091 GGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCT 1856150 Query 21145 TGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || | || || || || || ||||| Sbjct 1856151 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181 >seq322 Length=1513654 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 20965 GCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCT 21024 |||||| |||| |||||||| || || || |||||||| | ||| || | | || | Sbjct 277543 GCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTT 277484 Query 21025 CCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGG 21084 | ||||||||||||||| || | || | ||||||||| || | ||| |||| ||| Sbjct 277483 CTAGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTT 277424 Query 21085 CGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCT 21144 ||| || ||| || | | || |||| ||||| || || ||| ||||||| Sbjct 277423 GGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCT-CGACCTCAGGGTGATGGTCT 277365 Query 21145 TGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || | || || ||||| || ||||| Sbjct 277364 TGCCTGTGAGGGTCTTCACAAAGATCTGCAT 277334 >seq1818 Length=636242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| | ||| | ||| ||||||||||||||||| ||||| | | Sbjct 433001 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 433060 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || ||||| | ||||| ||| | || ||||||||||| || || Sbjct 433061 AAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 433120 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||||| || || | | | ||||| ||| || Sbjct 433121 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 433180 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| |||||||| || || | ||||| || || || ||||||||| Sbjct 433181 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 433231 >seq975 Length=833997 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| | ||| | ||| ||||||||||||||||| ||||| | | Sbjct 558488 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 558547 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || ||||| || ||||| ||| | || ||||||||||| || || Sbjct 558548 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 558607 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||||| || || | | | ||||| || || Sbjct 558608 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACC 558667 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| |||||||| || || | ||||| || || || ||||||||| Sbjct 558668 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 558718 >seq1526 Length=597461 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||||||| || ||||| ||||| | |||||| | ||||| Sbjct 458330 AGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCC 458271 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTG 21058 ||||||||||| || ||| | || | |||||||| Sbjct 458270 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTG 458236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422173200448076