Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq541 116 3e-21
seq377 116 3e-21
seq788 113 4e-20
seq203 95.1 1e-14
seq322 89.7 4e-13
seq1818 84.2 2e-11
seq975 84.2 2e-11
seq1526 82.4 6e-11
>seq541
Length=1170729
Score = 116 bits (128), Expect = 3e-21
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009
|||||| || | ||| |||| || | ||| ||||| || || ||||| || || | |
Sbjct 610509 CCCCTC--AGACAGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAA 610566
Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069
| || || | || |||||||| ||||| ||| | || || ||||||||||| ||| |
Sbjct 610567 GAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGA 610626
Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129
||| || || || |||||| ||||| | ||| || |||| ||||||| |
Sbjct 610627 TGCCCTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCT 610686
Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
||| ||| |||||||||||||| | || || || || || ||||||||||
Sbjct 610687 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 610737
>seq377
Length=1354867
Score = 116 bits (128), Expect = 3e-21
Identities = 156/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| |||| || ||||| || || |||||||| || | || || || | ||
Sbjct 824418 AGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATCT 824477
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || || ||||||||||| ||| | ||| || || ||
Sbjct 824478 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 824537
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | ||| || |||| ||||||| |||| || ||||||
Sbjct 824538 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGGTC 824597
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
|||||||||| || || || || || ||||||||||
Sbjct 824598 TTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTTGA 824634
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022
||| |||| || | ||| ||||| || || || || || || | || || || | ||
Sbjct 824189 GAGAACCAGGTGGAGAGTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATC 824248
Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082
|||| ||| |||| ||| | ||||| ||||||||||| ||| | ||| || || |
Sbjct 824249 TTCCATCTGCTTGCTGGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATA 824308
Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142
||| || ||||| | | | || |||| ||||||| |||| ||| |||||
Sbjct 824309 TTGGATATTCGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 824368
Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||||||||| || || || || || |||||
Sbjct 824369 CTTGCCGGTTAGGGTCTTCACGAAGATCTGCAT 824401
>seq788
Length=1000743
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| |||| |||||||| || || || |||||||| | ||| || || | ||
Sbjct 445012 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 445071
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||||||||||||| ||| || | ||||||||| || | ||| ||||||||
Sbjct 445072 TCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 445131
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||| || ||| || | | | || |||| |||||| || | ||| ||||||
Sbjct 445132 TGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 445191
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || | || || ||||| || |||||
Sbjct 445192 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq203
Length=1941613
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 20965 GCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCT 21024
|||||| |||| |||||||| | || || |||||||| | |||||| || | | |
Sbjct 1855973 GCACCAAGTGCAGGGTGGACTC--TCTGGATATTATAGTCTGACAGGGTACGGCCAGCTT 1856030
Query 21025 CCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGG 21084
||||||||||||||||| |||| || | ||||||||| || | | | ||||||||
Sbjct 1856031 CCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTT 1856090
Query 21085 CGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCT 21144
||| || ||| || | | | || |||| |||||| || | ||| ||| |||
Sbjct 1856091 GGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCT 1856150
Query 21145 TGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| || | || || || || || |||||
Sbjct 1856151 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181
>seq322
Length=1513654
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/211 (70%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 20965 GCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCT 21024
|||||| |||| |||||||| || || || |||||||| | ||| || | | || |
Sbjct 277543 GCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTT 277484
Query 21025 CCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGG 21084
| ||||||||||||||| || | || | ||||||||| || | ||| |||| |||
Sbjct 277483 CTAGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTT 277424
Query 21085 CGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCT 21144
||| || ||| || | | || |||| ||||| || || ||| |||||||
Sbjct 277423 GGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCT-CGACCTCAGGGTGATGGTCT 277365
Query 21145 TGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| || | || || ||||| || |||||
Sbjct 277364 TGCCTGTGAGGGTCTTCACAAAGATCTGCAT 277334
>seq1818
Length=636242
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || || | ||| | ||| | ||| ||||||||||||||||| ||||| | |
Sbjct 433001 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 433060
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || | | || ||||| | ||||| ||| | || ||||||||||| || ||
Sbjct 433061 AAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 433120
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||| || ||||| || || | | | ||||| ||| ||
Sbjct 433121 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 433180
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| | ||| |||||||| || || | ||||| || || || |||||||||
Sbjct 433181 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 433231
>seq975
Length=833997
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || || | ||| | ||| | ||| ||||||||||||||||| ||||| | |
Sbjct 558488 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 558547
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || | | || ||||| || ||||| ||| | || ||||||||||| || ||
Sbjct 558548 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 558607
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||| || ||||| || || | | | ||||| || ||
Sbjct 558608 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACC 558667
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| | ||| |||||||| || || | ||||| || || || |||||||||
Sbjct 558668 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 558718
>seq1526
Length=597461
Score = 82.4 bits (90), Expect = 6e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| |||| |||||||||||| || ||||| ||||| | |||||| | |||||
Sbjct 458330 AGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCC 458271
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTG 21058
||||||||||| || ||| | || | ||||||||
Sbjct 458270 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTG 458236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422173200448076
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |