Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1818 100 2e-16 seq975 100 2e-16 seq1 89.7 4e-13 seq182 86.0 5e-12 >seq1818 Length=636242 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 433230 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 433171 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | ||| || ||| ||||| ||||| | || ||| Sbjct 433170 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 433111 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || || ||||| |||||||| ||||| || |||||||| ||| || | || ||| Sbjct 433110 CAGCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCTGACTAC 433051 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||| ||||||||||| | ||||| Sbjct 433050 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 433016 >seq975 Length=833997 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||| Sbjct 558717 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCG 558658 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | ||| || ||| ||||| ||||| | || ||| Sbjct 558657 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 558598 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || || ||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 558597 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 558538 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||| ||||||||||| | ||||| Sbjct 558537 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 558503 >seq1 Length=12736304 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 12236889 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 12236830 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | ||| || ||| ||||| ||||| | || ||| Sbjct 12236829 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCC-GAT 12236771 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || || ||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 12236770 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 12236711 Query 25212 AATATTCAAAAGGAATCTACT 25232 || ||||||||||| |||||| Sbjct 12236710 AACATTCAAAAGGAGTCTACT 12236690 >seq182 Length=1985155 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || ||| | ||||| | ||||| || ||||| | | || | |||||| Sbjct 1379205 AAGATGCAGATTTTCCTGAAAACCCTTACGGGGAAGACCATCATCCTTGAGGCTGAACCC 1379146 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | | || | | || | || || ||| ||||| ||||| | || ||| Sbjct 1379145 TCGGGTACAATAGAAAATGTACAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 1379086 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || || ||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 1379085 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTTTGTCTGACTAC 1379026 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||| ||||||||||| | ||||| Sbjct 1379025 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 1378991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410713134941354