Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq788 122 8e-23 seq541 120 3e-22 seq1818 114 1e-20 seq975 114 1e-20 seq1309 104 2e-17 seq1 104 2e-17 seq203 93.3 4e-14 seq293 91.5 1e-13 seq9145 87.8 2e-12 seq2520 87.8 2e-12 seq182 87.8 2e-12 seq496 86.0 5e-12 >seq788 Length=1000743 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || || || || || || ||| || ||| || Sbjct 445014 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTC 445073 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | | ||||||||||| || || || ||||||||||||||| Sbjct 445074 CAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 445133 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || | |||||| || ||||||||| | ||| | || || Sbjct 445134 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTT 445193 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 445194 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq541 Length=1170729 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || |||||||| || ||||||||||| | |||||| ||| || Sbjct 610524 ACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 610583 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || |||||||| || ||| Sbjct 610584 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 610643 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 610644 ATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 610703 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 610704 CCGGTCAGGGTCTTCACGAAGATCTGCAT 610732 >seq1818 Length=636242 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| |||||||||||||| || Sbjct 433000 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 433059 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || |||||| ||| || || | || ||||| |||| || | ||||||||| ||||| Sbjct 433060 CAAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 433119 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || ||| || || || | ||| | || |||| | || || Sbjct 433120 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 433179 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || || || || || ||||| || ||||||||||| Sbjct 433180 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 433227 >seq975 Length=833997 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| |||||||||||||| || Sbjct 558487 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 558546 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || |||||| ||| || || || || ||||| |||| || | ||||||||| ||||| Sbjct 558547 CAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 558606 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || ||| || || || | ||| | || |||| || || Sbjct 558607 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAAC 558666 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || || || || || ||||| || ||||||||||| Sbjct 558667 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 558714 >seq1309 Length=750738 Score = 104 bits (114), Expect = 2e-17 Identities = 153/213 (72%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT----ATC 118585 |||||||| | || |||||||| || || || || || | || | |||| ||| Sbjct 105687 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATA---GC-CTGAGGGAGCGTGGCCATC 105742 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||||| || || | || |||| |||||| || || || |||||||||||||| Sbjct 105743 CTC-AGCTGTTGGCCTGCAGAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCCTTGTC 105801 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| ||| || | || || |||| | ||||||||||| ||| | ||| Sbjct 105802 TTGGATTTTGGCTTTGACATTTTTAACAATGTCACGGGGCTCGACCTCGAGGGTGATCGT 105861 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||||| || ||||| |||||||| Sbjct 105862 CTTGCCCATCAGAGTCTTCACAAAGATCTGCAT 105894 >seq1 Length=12736304 Score = 104 bits (114), Expect = 2e-17 Identities = 142/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| |||||||||||||| || || |||||| ||| || || || || ||| Sbjct 12236691 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCA 12236750 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | ||||||||| ||||| || || ||||| || ||| || || Sbjct 12236751 GCAAAGATCAGTCTCTGCTGATC-GGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTT 12236809 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | || |||| | || ||||||| ||| | || || || || || ||| Sbjct 12236810 ACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTT 12236869 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 12236870 TTCACGAAAATCTGCAT 12236886 >seq203 Length=1941613 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||| | | || || || || || || || | | || Sbjct 1855974 CACCAAGTGCAGGGTGGACTCTCT--GGATATTATAGTCTGACAGGGTACGGCCAGCTTC 1856031 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||||||||||| || || || ||| ||||||||||| Sbjct 1856032 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTG 1856091 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || | |||||| || ||| ||||||| ||| | | || Sbjct 1856092 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTT 1856151 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 1856152 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181 >seq293 Length=1771812 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||| ||||| | || | || ||||| |||||| ||||||| || Sbjct 534101 ACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGA 534042 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || |||||| ||| || || || || ||||| |||| | | ||||||||| ||||| Sbjct 534041 CAGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 533982 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || ||| || || || | ||| | || |||| | || | Sbjct 533981 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGC 533922 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || || || | |||||||| || ||||||||||| Sbjct 533921 CTCGAGAGTGATGGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCAT 533874 >seq9145 Length=4041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| | || | || ||| | |||||||||||||| || || ||| || Sbjct 282 TCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 341 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || || || || ||||| |||| || | ||||||||| ||||| || || ||||| Sbjct 342 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 401 Query 118643 -GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 |||| ||| || || | | ||| | || || | | || ||||||| || | Sbjct 402 ATTCTG-AATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGA 460 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| || ||||||||||| Sbjct 461 TGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 497 >seq2520 Length=369870 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| | || | || ||| | |||||||||||||| || || ||| || Sbjct 184206 TCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 184147 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || || || || ||||| |||| || | ||||||||| ||||| || || ||||| Sbjct 184146 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 184087 Query 118643 -GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 |||| ||| || || | | ||| | || || | | || ||||||| || | Sbjct 184086 ATTCTG-AATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGA 184028 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| || ||||||||||| Sbjct 184027 TGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 183991 >seq182 Length=1985155 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| |||||||||||||| || Sbjct 1378975 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 1379034 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| ||| || || || || ||||| |||| || | ||||||||| ||||| Sbjct 1379035 CAAAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 1379094 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || ||| || | || | ||| | || ||| | || | Sbjct 1379095 AATTCCTTCCTTATCCTGAATCTTGGCCTGTACATTTTCTATTGTACCCGAGGGTTCAGC 1379154 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | | | | || || || || || ||||| | ||||||||||| Sbjct 1379155 CTCAAGGATGATGGTCTTCCCCGTAAGGGTTTTCAGGAAAATCTGCAT 1379202 >seq496 Length=1197557 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||| | || || ||||| ||| || |||| ||| || Sbjct 1032611 CACCAAGTGCAGGGTGGACTCTCTCTGGATATTGTAGTCGGACA--GTGCCGCCATCTTC 1032668 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||||| || | | || ||| || || | || || | |||||||||||||| Sbjct 1032669 CAGCTGTTCACCCACAGAAATCAGATGCAGCAGGTCAGGCAGGATGCCCTCCTTGTCCTG 1032728 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | || |||||| ||| ||| ||||||| ||| | || || Sbjct 1032729 GATGTTGGCTTTGACATTCTCAGTGGTGTCAGTGGGCTCCACCTCGAGGGTGATGGTCTT 1032788 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||| ||||| || || |||| ||||||||| || Sbjct 1032789 GCCCGTCAGGGTCTTCTCAAAGATCTGCATGCCT 1032822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433742043796012