Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq788 122 8e-23
seq541 120 3e-22
seq1818 114 1e-20
seq975 114 1e-20
seq1309 104 2e-17
seq1 104 2e-17
seq203 93.3 4e-14
seq293 91.5 1e-13
seq9145 87.8 2e-12
seq2520 87.8 2e-12
seq182 87.8 2e-12
seq496 86.0 5e-12
>seq788
Length=1000743
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || |||||||| || || || || || || ||| || ||| ||
Sbjct 445014 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTC 445073
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || || | | ||||||||||| || || || |||||||||||||||
Sbjct 445074 CAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 445133
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||||| ||| || | || | |||||| || ||||||||| | ||| | || ||
Sbjct 445134 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTT 445193
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| ||||| || || ||||| ||||||||
Sbjct 445194 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq541
Length=1170729
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || |||||||| || ||||||||||| | |||||| ||| ||
Sbjct 610524 ACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 610583
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || ||||||| | |||||| || || || |||||||| || |||
Sbjct 610584 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 610643
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | ||||| |||||| || ||| ||||| | ||| | || |||
Sbjct 610644 ATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 610703
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||||| || || || || ||||||||
Sbjct 610704 CCGGTCAGGGTCTTCACGAAGATCTGCAT 610732
>seq1818
Length=636242
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||||||| | || | |||||||| |||||||||||||| ||
Sbjct 433000 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 433059
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| |||||| ||| || || | || ||||| |||| || | ||||||||| |||||
Sbjct 433060 CAAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 433119
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || ||| || || || | ||| | || |||| | || ||
Sbjct 433120 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 433179
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||| | || || || || || ||||| || |||||||||||
Sbjct 433180 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 433227
>seq975
Length=833997
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||||||| | || | |||||||| |||||||||||||| ||
Sbjct 558487 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 558546
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| |||||| ||| || || || || ||||| |||| || | ||||||||| |||||
Sbjct 558547 CAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 558606
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || ||| || || || | ||| | || |||| || ||
Sbjct 558607 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAAC 558666
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||| | || || || || || ||||| || |||||||||||
Sbjct 558667 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 558714
>seq1309
Length=750738
Score = 104 bits (114), Expect = 2e-17
Identities = 153/213 (72%), Gaps = 9/213 (4%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT----ATC 118585
|||||||| | || |||||||| || || || || || | || | |||| |||
Sbjct 105687 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATA---GC-CTGAGGGAGCGTGGCCATC 105742
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||| ||||||| || || | || |||| |||||| || || || ||||||||||||||
Sbjct 105743 CTC-AGCTGTTGGCCTGCAGAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCCTTGTC 105801
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
| ||||| ||| || | || || |||| | ||||||||||| ||| | |||
Sbjct 105802 TTGGATTTTGGCTTTGACATTTTTAACAATGTCACGGGGCTCGACCTCGAGGGTGATCGT 105861
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||||||| || ||||| ||||||||
Sbjct 105862 CTTGCCCATCAGAGTCTTCACAAAGATCTGCAT 105894
>seq1
Length=12736304
Score = 104 bits (114), Expect = 2e-17
Identities = 142/197 (72%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| |||||||||||||| || || |||||| ||| || || || || |||
Sbjct 12236691 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCA 12236750
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| || | ||||||||| ||||| || || ||||| || ||| || ||
Sbjct 12236751 GCAAAGATCAGTCTCTGCTGATC-GGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTT 12236809
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | ||| | || |||| | || ||||||| ||| | || || || || || |||
Sbjct 12236810 ACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTT 12236869
Query 118722 TTTACAAAAATCTGCAT 118738
|| || |||||||||||
Sbjct 12236870 TTCACGAAAATCTGCAT 12236886
>seq203
Length=1941613
Score = 93.3 bits (102), Expect = 4e-14
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || |||||| | | || || || || || || || | | ||
Sbjct 1855974 CACCAAGTGCAGGGTGGACTCTCT--GGATATTATAGTCTGACAGGGTACGGCCAGCTTC 1856031
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || || | || ||||||||||| || || || ||| |||||||||||
Sbjct 1856032 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTG 1856091
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||||| ||| || | || | |||||| || ||| ||||||| ||| | | ||
Sbjct 1856092 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTT 1856151
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| ||||| || || || || ||||||||
Sbjct 1856152 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181
>seq293
Length=1771812
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||| ||||| | || | || ||||| |||||| ||||||| ||
Sbjct 534101 ACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGA 534042
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| |||||| ||| || || || || ||||| |||| | | ||||||||| |||||
Sbjct 534041 CAGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 533982
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || ||| || || || | ||| | || |||| | || |
Sbjct 533981 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGC 533922
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || | || || || | |||||||| || |||||||||||
Sbjct 533921 CTCGAGAGTGATGGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCAT 533874
>seq9145
Length=4041
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582
||||||||| | || | || ||| | |||||||||||||| || || ||| ||
Sbjct 282 TCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 341
Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642
||| || || || || ||||| |||| || | ||||||||| ||||| || || |||||
Sbjct 342 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 401
Query 118643 -GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701
|||| ||| || || | | ||| | || || | | || ||||||| || |
Sbjct 402 ATTCTG-AATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGA 460
Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || ||||| || |||||||||||
Sbjct 461 TGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 497
>seq2520
Length=369870
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582
||||||||| | || | || ||| | |||||||||||||| || || ||| ||
Sbjct 184206 TCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 184147
Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642
||| || || || || ||||| |||| || | ||||||||| ||||| || || |||||
Sbjct 184146 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 184087
Query 118643 -GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701
|||| ||| || || | | ||| | || || | | || ||||||| || |
Sbjct 184086 ATTCTG-AATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGA 184028
Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || ||||| || |||||||||||
Sbjct 184027 TGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 183991
>seq182
Length=1985155
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||||||| | || | |||||||| |||||||||||||| ||
Sbjct 1378975 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 1379034
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||||| ||| || || || || ||||| |||| || | ||||||||| |||||
Sbjct 1379035 CAAAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 1379094
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || ||| || | || | ||| | || ||| | || |
Sbjct 1379095 AATTCCTTCCTTATCCTGAATCTTGGCCTGTACATTTTCTATTGTACCCGAGGGTTCAGC 1379154
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| | | | | || || || || || ||||| | |||||||||||
Sbjct 1379155 CTCAAGGATGATGGTCTTCCCCGTAAGGGTTTTCAGGAAAATCTGCAT 1379202
>seq496
Length=1197557
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || |||||| | || || ||||| ||| || |||| ||| ||
Sbjct 1032611 CACCAAGTGCAGGGTGGACTCTCTCTGGATATTGTAGTCGGACA--GTGCCGCCATCTTC 1032668
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||||| || | | || ||| || || | || || | ||||||||||||||
Sbjct 1032669 CAGCTGTTCACCCACAGAAATCAGATGCAGCAGGTCAGGCAGGATGCCCTCCTTGTCCTG 1032728
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || ||| || | || |||||| ||| ||| ||||||| ||| | || ||
Sbjct 1032729 GATGTTGGCTTTGACATTCTCAGTGGTGTCAGTGGGCTCCACCTCGAGGGTGATGGTCTT 1032788
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
||| ||||| || || |||| ||||||||| ||
Sbjct 1032789 GCCCGTCAGGGTCTTCTCAAAGATCTGCATGCCT 1032822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433742043796012
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