Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq105 105 1e-17
>seq105
Length=2675036
Score = 105 bits (116), Expect = 1e-17
Identities = 104/132 (79%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116
|||||||||||||| ||||| |||||||| |||||||| ||||||||| | || || ||
Sbjct 458723 GCATTTTTTGGAGCACAGCTGAATTCTTTCATCCATGTGATTATGTACTCATACTACGGG 458782
Query 52117 ATGGCCGCTTGTGGTCC-TATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175
| || || | ||| || | ||||| |||||||| ||||||||||| || | |||||
Sbjct 458783 TTAGCTGCGTTTGGCCCGTGGATTCAG-AAGTATCTTTGGTGGAAACGATACTTGACTAT 458841
Query 52176 AATGCAGTTGGT 52187
||||| ||||
Sbjct 458842 GTTGCAGCTGGT 458853
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244
||| ||||||||| | | || ||||| || || |||| |||||| |||||| || ||
Sbjct 461290 GGTTCAGTTCCATGTGACCATTGGACACACAGCACTGTCTCTTTACACAGATTGTCCCTT 461349
Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304
||||||||||| || ||| | | ||| |||| | || || |||||||| || |||
Sbjct 461350 CCCAAAATGGATGCACTGGGCCCTCATTGCCTATGCGATCAGCTTCATATTTCTCTTTCT 461409
Query 52305 TAACTTCTATTTTAGAACATACAA 52328
|||||||||| || | ||||||||
Sbjct 461410 TAACTTCTATGTTCGGACATACAA 461433
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960
|||| ||||| | |||| |||||| | || || ||||| || || ||||| || || |||
Sbjct 456988 TGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACAGTGTTTTTTATCCTGAGG 457047
Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020
|| ||| || || || ||| || || ||||||||||| | ||| |||||||| |
Sbjct 457048 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 457107
Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055
| ||||| || ||||||||| | || || || ||
Sbjct 457108 TGGTGGATTGGAATTAAATGGGTCGCAGGGGGACA 457142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923003955728440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |