Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq105 105 1e-17 >seq105 Length=2675036 Score = 105 bits (116), Expect = 1e-17 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| |||||||| |||||||| ||||||||| | || || || Sbjct 458723 GCATTTTTTGGAGCACAGCTGAATTCTTTCATCCATGTGATTATGTACTCATACTACGGG 458782 Query 52117 ATGGCCGCTTGTGGTCC-TATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || | ||| || | ||||| |||||||| ||||||||||| || | ||||| Sbjct 458783 TTAGCTGCGTTTGGCCCGTGGATTCAG-AAGTATCTTTGGTGGAAACGATACTTGACTAT 458841 Query 52176 AATGCAGTTGGT 52187 ||||| |||| Sbjct 458842 GTTGCAGCTGGT 458853 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | | || ||||| || || |||| |||||| |||||| || || Sbjct 461290 GGTTCAGTTCCATGTGACCATTGGACACACAGCACTGTCTCTTTACACAGATTGTCCCTT 461349 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||||||||||| || ||| | | ||| |||| | || || |||||||| || ||| Sbjct 461350 CCCAAAATGGATGCACTGGGCCCTCATTGCCTATGCGATCAGCTTCATATTTCTCTTTCT 461409 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 |||||||||| || | |||||||| Sbjct 461410 TAACTTCTATGTTCGGACATACAA 461433 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| | |||| |||||| | || || ||||| || || ||||| || || ||| Sbjct 456988 TGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACAGTGTTTTTTATCCTGAGG 457047 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || || ||| || || ||||||||||| | ||| |||||||| | Sbjct 457048 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 457107 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || ||||||||| | || || || || Sbjct 457108 TGGTGGATTGGAATTAAATGGGTCGCAGGGGGACA 457142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923003955728440