Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq788 118 1e-21
seq5116 102 9e-17
seq4756 100 3e-16
seq943 100 3e-16
seq795 100 3e-16
seq1410 98.7 1e-15
seq203 96.9 4e-15
seq975 82.4 9e-11
>seq788
Length=1000743
Score = 118 bits (130), Expect = 1e-21
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
|||||| |||| ||| ||| || || ||||| || || | |||||| || | || ||
Sbjct 445014 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTC 445073
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
||||| || || || || | || ||||||||||| | ||| | || |||||||||
Sbjct 445074 CAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 445133
Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
|||||| ||||| || | | ||||| || | || || || | |||||||| ||
Sbjct 445134 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTT 445193
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||||| || ||||| |||||||| |||||
Sbjct 445194 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq5116
Length=71533
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|| ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 25502 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 25443
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 25442 ACTATACTAACGAGGA 25427
>seq4756
Length=97781
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 85726 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 85667
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 85666 TACTAACGAGGAT 85654
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 88013 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 87954
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 87953 TACTAACGAGGA 87942
>seq943
Length=832053
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 250521 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 250580
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 250581 ATACTAACGAGGA 250593
>seq795
Length=1132128
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 893659 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 893600
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 893599 ATACTAACGAGGA 893587
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 964360 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 964419
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 964420 TACTAACGAGGA 964431
>seq1410
Length=700509
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 86297 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 86238
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 86237 TACTAACGAGGA 86226
>seq203
Length=1941613
Score = 96.9 bits (106), Expect = 4e-15
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
|||||| |||| ||| ||| | || ||||| || || | ||| || || | | ||
Sbjct 1855974 CACCAAGTGCAGGGTGGACTC--TCTGGATATTATAGTCTGACAGGGTACGGCCAGCTTC 1856031
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
||||| || || || || || || ||||||||||| | ||| | | |||||||||
Sbjct 1856032 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTG 1856091
Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
|||||| ||||| || | | ||||| || | || || |||| |||||| | ||
Sbjct 1856092 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTT 1856151
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||||| || ||||| || ||||| |||||
Sbjct 1856152 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 45029 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 44970
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 44969 TACTAACGAGGA 44958
>seq975
Length=833997
Score = 82.4 bits (90), Expect = 9e-11
Identities = 150/217 (69%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030
|||||| | ||| | || |||||||||||| ||||| |||| || ||| || | ||
Sbjct 558502 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATC 558561
Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090
|| || ||||| ||||| || || |||| |||||| || | || | | ||||| ||
Sbjct 558562 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 558621
Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149
| ||| | || | || | | | | || || || ||| || |||| |||||||
Sbjct 558622 C-TGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGG 558680
Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
| || ||||| || || || || || || ||||||||
Sbjct 558681 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 558717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571698154451080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |