Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq788 118 1e-21 seq5116 102 9e-17 seq4756 100 3e-16 seq943 100 3e-16 seq795 100 3e-16 seq1410 98.7 1e-15 seq203 96.9 4e-15 seq975 82.4 9e-11 >seq788 Length=1000743 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| ||| ||| || || ||||| || || | |||||| || | || || Sbjct 445014 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTC 445073 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || || || || | || ||||||||||| | ||| | || ||||||||| Sbjct 445074 CAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 445133 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| ||||| || | | ||||| || | || || || | |||||||| || Sbjct 445134 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTT 445193 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| |||||||| ||||| Sbjct 445194 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq5116 Length=71533 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 25502 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 25443 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 25442 ACTATACTAACGAGGA 25427 >seq4756 Length=97781 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 85726 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 85667 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 85666 TACTAACGAGGAT 85654 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 88013 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 87954 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 87953 TACTAACGAGGA 87942 >seq943 Length=832053 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 250521 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 250580 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 250581 ATACTAACGAGGA 250593 >seq795 Length=1132128 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 893659 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 893600 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 893599 ATACTAACGAGGA 893587 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 964360 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 964419 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 964420 TACTAACGAGGA 964431 >seq1410 Length=700509 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 86297 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 86238 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 86237 TACTAACGAGGA 86226 >seq203 Length=1941613 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| ||| ||| | || ||||| || || | ||| || || | | || Sbjct 1855974 CACCAAGTGCAGGGTGGACTC--TCTGGATATTATAGTCTGACAGGGTACGGCCAGCTTC 1856031 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || || || || || || ||||||||||| | ||| | | ||||||||| Sbjct 1856032 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTG 1856091 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| ||||| || | | ||||| || | || || |||| |||||| | || Sbjct 1856092 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTT 1856151 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| || ||||| ||||| Sbjct 1856152 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 45029 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 44970 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 44969 TACTAACGAGGA 44958 >seq975 Length=833997 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | || |||||||||||| ||||| |||| || ||| || | || Sbjct 558502 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATC 558561 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || ||||| ||||| || || |||| |||||| || | || | | ||||| || Sbjct 558562 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 558621 Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| | || | || | | | | || || || ||| || |||| ||||||| Sbjct 558622 C-TGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGG 558680 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | || ||||| || || || || || || |||||||| Sbjct 558681 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 558717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571698154451080