Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq293 98.7 1e-15 seq975 93.3 6e-14 seq182 93.3 6e-14 seq1818 89.7 8e-13 >seq293 Length=1771812 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||||||| || | ||| | ||| || || ||| || | || || || || Sbjct 534100 CCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAG-TGTTGTAGTCAGA 534042 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | ||| || | ||| || |||||||| |||||||| |||||||| ||||| Sbjct 534041 CAGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 533982 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 533981 AATTCCTTCCTTATCCTG 533964 >seq975 Length=833997 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || || || || || || Sbjct 558488 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 558546 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| ||| |||||||| ||||| Sbjct 558547 CAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 558606 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 558607 AATTCCTTCCTTATCCTG 558624 >seq182 Length=1985155 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || || || || || || Sbjct 1378976 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 1379034 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| ||| |||||||| ||||| Sbjct 1379035 CAAAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 1379094 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 1379095 AATTCCTTCCTTATCCTG 1379112 >seq1818 Length=636242 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || || || || || || Sbjct 433001 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 433059 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | || || |||||||| |||| ||| |||||||| ||||| Sbjct 433060 CAAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 433119 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 433120 AATTCCTTCCTTATCCTG 433137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743371086629120