Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq788 109 4e-19 seq541 107 1e-18 seq377 100 2e-16 seq975 86.0 4e-12 seq322 86.0 4e-12 seq176 84.2 1e-11 seq203 82.4 5e-11 >seq788 Length=1000743 Score = 109 bits (120), Expect = 4e-19 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || |||||||| || || ||||| ||||| |||| | || Sbjct 445012 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 445071 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| || |||| || ||||||||||| | |||| | || ||||||||| Sbjct 445072 TCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTC 445130 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || | || | || | | ||||| || | ||||||| Sbjct 445131 TTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 445189 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 | ||||| || || || |||||||||||||||||| || Sbjct 445190 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCT 445227 >seq541 Length=1170729 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| |||||||| |||||||| || || || ||| | || Sbjct 610521 AGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 610580 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || ||||||| ||||||||| ||| | || ||| || || Sbjct 610581 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 610640 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 610641 TGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 610700 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||| ||||||||||| Sbjct 610701 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 610732 >seq377 Length=1354867 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | || |||||||| ||||| || || || || ||| | || Sbjct 824417 CAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATC 824476 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||||||||| || ||||||| ||||||||| ||| | || ||| || || Sbjct 824477 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 824536 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || |||| | |||||| Sbjct 824537 TTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGGT 824596 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||| ||||||||||| Sbjct 824597 CTTGCCGGTTAGGGTCTTCACGAAGATCTGCAT 824629 >seq975 Length=833997 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || |||| ||| || || | |||| || || || ||||||||||| ||| Sbjct 558488 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 558547 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || |||| |||||||| || || || || | |||||| || || Sbjct 558548 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 558607 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||||| || |||| | ||| | || ||| || Sbjct 558608 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACC 558667 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || |||||||| || |||||||| Sbjct 558668 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 558714 >seq322 Length=1513654 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/197 (72%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| || || ||||| ||||| || | | || || | ||| ||||| || ||| Sbjct 277523 TCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTCTAGCTGTTTGCCCGCAAAA 277464 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 | || | ||||||||| | |||| | || ||||| ||| || ||| ||||| | || Sbjct 277463 GTCAGACACTGCTGGTCAGGCGGG-ATGCCCTCCTGGTCTTGGAT-TTTGGCTTTGACAT 277406 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | | || | | ||||| || | |||||||| ||||| ||||| || |||| Sbjct 277405 TCTCAGTGGTGTCACTGGGCTCGACCTC-AGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 277347 Query 34377 CAAAGATCTGCATCGCT 34393 |||||||||||||| || Sbjct 277346 CAAAGATCTGCATCTCT 277330 >seq176 Length=2148545 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| |||||||| |||||||| || || || ||| | || Sbjct 212432 AGAACCAGGTG-AGAGTCAACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 212374 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG-TC 34296 |||| |||||||| || || ||||||| || |||||| ||| | || |||||| || Sbjct 212373 TCCAGCTGCTTGCTGGCAAAGATGAGCCTCTCCTGGTCATGGGGGATGCCCTCCTTTATC 212314 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 212313 CTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 212254 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || |||| ||||||||||| Sbjct 212253 CTTGCTGGTCAGGGTCTTCATGAAGATCTGCAT 212221 >seq203 Length=1941613 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 || |||| || || ||||| ||||| |||| | | |||| ||| ||||| || |||| Sbjct 1855992 CTCTCTGGATATTATAGTCTGACAGGGTACGGCCAGCTTCCAGCTGTTTGCCCGCAAAAA 1856051 Query 34260 TGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 | || ||||||||||| | |||| | | ||||||||| || ||| ||||| | || Sbjct 1856052 TCAGACGCTGCTGGTCAGGCGGG-ATGTCCTCCTTGTCTTGGAT-TTTGGCTTTGACATT 1856109 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | || || || | |||||| | ||||| || || || ||||| Sbjct 1856110 CTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTGCCCGTCAGGGTCTTCAC 1856169 Query 34378 AAAGATCTGCATCGCT 34393 |||||||||||| || Sbjct 1856170 GAAGATCTGCATCTCT 1856185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323006201440160