Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq788 109 4e-19
seq541 107 1e-18
seq377 100 2e-16
seq975 86.0 4e-12
seq322 86.0 4e-12
seq176 84.2 1e-11
seq203 82.4 5e-11
>seq788
Length=1000743
Score = 109 bits (120), Expect = 4e-19
Identities = 158/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||| ||| | || |||||||| || || ||||| ||||| |||| | ||
Sbjct 445012 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 445071
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296
|||| ||| ||||| || |||| || ||||||||||| | |||| | || |||||||||
Sbjct 445072 TCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTC 445130
Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355
|| ||| ||||| | || | || | || | | ||||| || | |||||||
Sbjct 445131 TTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 445189
Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
| ||||| || || || |||||||||||||||||| ||
Sbjct 445190 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCT 445227
>seq541
Length=1170729
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | ||| |||||||| |||||||| || || || ||| | ||
Sbjct 610521 AGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 610580
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| |||||||||||| || ||||||| ||||||||| ||| | || ||| || ||
Sbjct 610581 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 610640
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | || | || | | || || |||| ||||||||
Sbjct 610641 TGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 610700
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| || || ||||| |||||||||||
Sbjct 610701 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 610732
>seq377
Length=1354867
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||| |||||||| | || |||||||| ||||| || || || || ||| | ||
Sbjct 824417 CAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATC 824476
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| |||||||||||| || ||||||| ||||||||| ||| | || ||| || ||
Sbjct 824477 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 824536
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||||| ||| | || | || | || | | || || |||| | ||||||
Sbjct 824537 TTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGGT 824596
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| || || ||||| |||||||||||
Sbjct 824597 CTTGCCGGTTAGGGTCTTCACGAAGATCTGCAT 824629
>seq975
Length=833997
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || |||| ||| || || | |||| || || || ||||||||||| |||
Sbjct 558488 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 558547
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| || | || |||| |||||||| || || || || | |||||| || ||
Sbjct 558548 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 558607
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||| || ||||| ||||| || |||| | ||| | || ||| ||
Sbjct 558608 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACC 558667
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| || || || || |||||||| || ||||||||
Sbjct 558668 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 558714
>seq322
Length=1513654
Score = 86.0 bits (94), Expect = 4e-12
Identities = 141/197 (72%), Gaps = 5/197 (3%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|||||||| || || ||||| ||||| || | | || || | ||| ||||| || |||
Sbjct 277523 TCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTCTAGCTGTTTGCCCGCAAAA 277464
Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
| || | ||||||||| | |||| | || ||||| ||| || ||| ||||| | ||
Sbjct 277463 GTCAGACACTGCTGGTCAGGCGGG-ATGCCCTCCTGGTCTTGGAT-TTTGGCTTTGACAT 277406
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| | | || | | ||||| || | |||||||| ||||| ||||| || ||||
Sbjct 277405 TCTCAGTGGTGTCACTGGGCTCGACCTC-AGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 277347
Query 34377 CAAAGATCTGCATCGCT 34393
|||||||||||||| ||
Sbjct 277346 CAAAGATCTGCATCTCT 277330
>seq176
Length=2148545
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | ||| |||||||| |||||||| || || || ||| | ||
Sbjct 212432 AGAACCAGGTG-AGAGTCAACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 212374
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG-TC 34296
|||| |||||||| || || ||||||| || |||||| ||| | || |||||| ||
Sbjct 212373 TCCAGCTGCTTGCTGGCAAAGATGAGCCTCTCCTGGTCATGGGGGATGCCCTCCTTTATC 212314
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||||| ||| | || | || | || | | || || |||| ||||||||
Sbjct 212313 CTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 212254
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||| || || |||| |||||||||||
Sbjct 212253 CTTGCTGGTCAGGGTCTTCATGAAGATCTGCAT 212221
>seq203
Length=1941613
Score = 82.4 bits (90), Expect = 5e-11
Identities = 139/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259
|| |||| || || ||||| ||||| |||| | | |||| ||| ||||| || ||||
Sbjct 1855992 CTCTCTGGATATTATAGTCTGACAGGGTACGGCCAGCTTCCAGCTGTTTGCCCGCAAAAA 1856051
Query 34260 TGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317
| || ||||||||||| | |||| | | ||||||||| || ||| ||||| | ||
Sbjct 1856052 TCAGACGCTGCTGGTCAGGCGGG-ATGTCCTCCTTGTCTTGGAT-TTTGGCTTTGACATT 1856109
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | || | | || || || | |||||| | ||||| || || || |||||
Sbjct 1856110 CTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTGCCCGTCAGGGTCTTCAC 1856169
Query 34378 AAAGATCTGCATCGCT 34393
|||||||||||| ||
Sbjct 1856170 GAAGATCTGCATCTCT 1856185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323006201440160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |