Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq19 188 7e-43
seq674 102 8e-17
>seq19
Length=4596781
Score = 188 bits (208), Expect = 7e-43
Identities = 575/880 (65%), Gaps = 19/880 (2%)
Strand=Plus/Plus
Query 15917 TCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAA 15976
||| || ||||||||| ||| ||| | ||||| |||| |||||||||||||||||
Sbjct 3964790 TCTGTTGGATTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAG 3964849
Query 15977 TTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAG 16036
|| ||||| | ||||||||| ||||| || ||||| ||||||| | | |
Sbjct 3964850 TTCC-----CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAA 3964904
Query 16037 TATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTC 16096
|| | | || | |||| || | || || ||||| || || |||||||| |||
Sbjct 3964905 ACCTTGCCAAAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTC 3964964
Query 16097 ATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttt 16156
||||| || ||||| | || | || ||||| | | || || | || |
Sbjct 3964965 ATTAACGTGCAATTCATCCTAATGAGCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGC 3965024
Query 16157 tCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTA-- 16214
||||| ||| || | ||| ||||| || | ||| | || || ||| |||||
Sbjct 3965025 TCTATCCGAACGGCATTAATAATTATTTCCTTCACT-CTCTGCTT---GGAAGGTTTGTG 3965080
Query 16215 -ATAAGT-GTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTAT 16272
| ||| |||| ||||| | || ||||| ||||| || || || || || || || ||
Sbjct 3965081 GACCAGTTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAAT 3965140
Query 16273 TAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGC 16332
| || || ||||| || || || ||||| || | ||||| || | ||| ||||| |
Sbjct 3965141 AAGTTCATTGGAAAACGTCAG-CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGT 3965199
Query 16333 GGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC 16392
||||| |||||||||||||| || ||||| || || ||||| | || | || || ||
Sbjct 3965200 CGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCC 3965259
Query 16393 GTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACA 16452
||| || | ||| | |||| | ||||| | ||| || || |||||
Sbjct 3965260 GTAGGTAGCCTCTTTGTCGCCAGTCCAATGCAAGGCCCAGTCTGCCTT---CTTTACACA 3965316
Query 16453 GTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGT 16512
||| ||| | || || || | | | | |||||| | |||| || ||| |
Sbjct 3965317 AGGCATTGTCTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACT 3965376
Query 16513 ATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA 16572
|| || || | ||| ||||| || ||||| || || ||||| || || || || |||||
Sbjct 3965377 GTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATA 3965436
Query 16573 AAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTT 16632
|| || | ||||| | || || ||||| | ||||| || | |||||||| ||
Sbjct 3965437 GAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATT 3965496
Query 16633 AACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTT 16692
||||| ||||| || | |||| || || || | ||| | ||| | | | || |
Sbjct 3965497 TACTATGCCATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTC 3965556
Query 16693 A-TCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCC 16751
| || | | || | || || || || || | ||| |||||||| | ||||
Sbjct 3965557 AGGCTTCAGGGATT-CCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCC 3965615
Query 16752 AAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791
|||| ||||| |||| || | |||||| | ||| || ||
Sbjct 3965616 AAAAGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATC 3965655
>seq674
Length=1058379
Score = 102 bits (112), Expect = 8e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | || ||||||||| | | | || ||| |||| |
Sbjct 574006 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATGACTGCAAAAC 573947
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
|||||| || ||||| || ||||||||||||||||| |||||||| ||||| || |
Sbjct 573946 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCT 573887
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||| ||||||| ||
Sbjct 573886 CCATAAAATCAAAGGGATTTTCTG 573863
Score = 82.4 bits (90), Expect = 7e-11
Identities = 80/103 (78%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106
|||| | ||||| | |||||| || || ||||| || |||||||||||||| ||| |||
Sbjct 564762 ATCCAAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACAC 564703
Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149
| |||||||| || | ||| || | ||||||||||||||
Sbjct 564702 AATTCATTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 564660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462415387024600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |