Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq19 188 7e-43 seq674 102 8e-17 >seq19 Length=4596781 Score = 188 bits (208), Expect = 7e-43 Identities = 575/880 (65%), Gaps = 19/880 (2%) Strand=Plus/Plus Query 15917 TCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAA 15976 ||| || ||||||||| ||| ||| | ||||| |||| ||||||||||||||||| Sbjct 3964790 TCTGTTGGATTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAG 3964849 Query 15977 TTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAG 16036 || ||||| | ||||||||| ||||| || ||||| ||||||| | | | Sbjct 3964850 TTCC-----CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAA 3964904 Query 16037 TATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTC 16096 || | | || | |||| || | || || ||||| || || |||||||| ||| Sbjct 3964905 ACCTTGCCAAAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTC 3964964 Query 16097 ATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttt 16156 ||||| || ||||| | || | || ||||| | | || || | || | Sbjct 3964965 ATTAACGTGCAATTCATCCTAATGAGCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGC 3965024 Query 16157 tCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTA-- 16214 ||||| ||| || | ||| ||||| || | ||| | || || ||| ||||| Sbjct 3965025 TCTATCCGAACGGCATTAATAATTATTTCCTTCACT-CTCTGCTT---GGAAGGTTTGTG 3965080 Query 16215 -ATAAGT-GTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTAT 16272 | ||| |||| ||||| | || ||||| ||||| || || || || || || || || Sbjct 3965081 GACCAGTTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAAT 3965140 Query 16273 TAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGC 16332 | || || ||||| || || || ||||| || | ||||| || | ||| ||||| | Sbjct 3965141 AAGTTCATTGGAAAACGTCAG-CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGT 3965199 Query 16333 GGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC 16392 ||||| |||||||||||||| || ||||| || || ||||| | || | || || || Sbjct 3965200 CGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCC 3965259 Query 16393 GTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACA 16452 ||| || | ||| | |||| | ||||| | ||| || || ||||| Sbjct 3965260 GTAGGTAGCCTCTTTGTCGCCAGTCCAATGCAAGGCCCAGTCTGCCTT---CTTTACACA 3965316 Query 16453 GTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGT 16512 ||| ||| | || || || | | | | |||||| | |||| || ||| | Sbjct 3965317 AGGCATTGTCTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACT 3965376 Query 16513 ATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA 16572 || || || | ||| ||||| || ||||| || || ||||| || || || || ||||| Sbjct 3965377 GTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATA 3965436 Query 16573 AAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTT 16632 || || | ||||| | || || ||||| | ||||| || | |||||||| || Sbjct 3965437 GAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATT 3965496 Query 16633 AACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTT 16692 ||||| ||||| || | |||| || || || | ||| | ||| | | | || | Sbjct 3965497 TACTATGCCATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTC 3965556 Query 16693 A-TCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCC 16751 | || | | || | || || || || || | ||| |||||||| | |||| Sbjct 3965557 AGGCTTCAGGGATT-CCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCC 3965615 Query 16752 AAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 |||| ||||| |||| || | |||||| | ||| || || Sbjct 3965616 AAAAGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATC 3965655 >seq674 Length=1058379 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || ||||||||| | | | || ||| |||| | Sbjct 574006 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATGACTGCAAAAC 573947 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||| || ||||| || ||||||||||||||||| |||||||| ||||| || | Sbjct 573946 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCT 573887 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 573886 CCATAAAATCAAAGGGATTTTCTG 573863 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||| | ||||| | |||||| || || ||||| || |||||||||||||| ||| ||| Sbjct 564762 ATCCAAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACAC 564703 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 | |||||||| || | ||| || | |||||||||||||| Sbjct 564702 AATTCATTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 564660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462415387024600