Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1258 1745 0.0 seq701 185 6e-42 >seq1258 Length=759385 Score = 1745 bits (1934), Expect = 0.0 Identities = 1413/1717 (82%), Gaps = 66/1717 (4%) Strand=Plus/Minus Query 107084 TCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAAG------ 107137 ||||||||||| | ||| ||||| || |||| ||| ||| || || ||||| Sbjct 276540 TCCCAGCATGAATGGCTTGTTTGTAGGGTCAGATTATAGACCTCTGTCAACAAGCCAGGG 276481 Query 107138 -------GGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTT 107190 | || |||||||| |||||||||||||||||||||| |||||| || Sbjct 276480 ATAAGAGGTTCCTAGGCAGGTCTTGACTGAGGATATTTGTCTAGAGAAGAAAT------- 276428 Query 107191 TACCATCACTCTGGAGTTGAACTTGATGTT--------------CTGGATTAGTTTGTAA 107236 ||| || ||||||||| ||||||||| | || ||||||||||| Sbjct 276427 ----ATCCCTTTGGAGTTGAGCTTGATGTTTCTGTGAATACATTCAGGGTTAGTTTGTAA 276372 Query 107237 TTAAAGGCATTTTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAAC 107293 || ||||||||||||||||||||||||| ||||||||| |||| ||||||||| ||| Sbjct 276371 TTGAAGGCATTTTGTTCTGTCCAAGGATTCCATCCTCCTCCTCCTTCCCTGTGCCCCAAC 276312 Query 107294 TCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACA 107353 | ||| | || ||| |||||||||||| | ||||||||||||||| | ||| || Sbjct 276311 TG--CTGGTTTCTCATTCCATGAAGATGGTTTGGTGGAAGAAGAAGCCCTTTCGGCAGCA 276254 Query 107354 TCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCT 107413 ||| ||||||||||||||||||||||||||||||||||| ||| ||||||| |||| || Sbjct 276253 TCACCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTGGTTGCTCTGAGGTTTTCTCT 276194 Query 107414 CAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCA 107473 |||||| |||||||| | || ||| |||||||||||||||||||||| ||| |||| Sbjct 276193 CAGGTTGAAATGTGACTTTGAATCCCTGGATCTGGAGTCCAGGGACTTTTGGAGCCAGCC 276134 Query 107474 CTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTC 107533 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 276133 CTGTAGGGACATCTTGTACAAGTCCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTC 276074 Query 107534 TGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGT 107593 ||| |||| |||||||||||| | |||||| |||| ||||| ||||||||||| || Sbjct 276073 TGGAATCATCCGAGGGGACCAGCAGGCAGTGACGGAGGCTCTCCTGGACAACCTGGAGGT 276014 Query 107594 GAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGA 107653 ||||| |||||| ||| |||| | |||| | ||||| ||||| |||||||||||||| Sbjct 276013 CAAGAAGAAGCGGGAGCCCTTCACAGACACCGACTACCTTAACATGACCAGAGACTGTGA 275954 Query 107654 GCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTT 107713 || ||| |||||| ||||||||||||||| |||||| ||||| ||||||||| ||||||| Sbjct 275953 GCACTTTAAGGCCGAAAGGAAGTTCATACGGTTCCCTCTGAGCAAAGAAGAGTTAGACTT 275894 Query 107714 CCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCG 107773 ||| ||||| ||||| |||||||||||||||||||| || ||||||||| | |||||||| Sbjct 275893 CCCTATTGCATACTCTATGGTGGTCCATGAGAAGATCGAGAACTTTGAAAGACTGCTGCG 275834 Query 107774 AGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGAC 107833 ||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||| || Sbjct 275833 AGCTTTGTATGCCCCTCAGAACATATACTGTGTCCATGTGGATGAGAAATCCCCAGAAAC 275774 Query 107834 TTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAA 107893 |||||||||||| |||||||| ||| | || |||||||| ||||||||||| |||||||| Sbjct 275773 TTTCAAAGAGGCAGTCAAGGCGATTGTGTCATGCTTCCCAAATGTCTTCATAGCCAGTAA 275714 Query 107894 GTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGA 107953 |||||| | |||||||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct 275713 GTTGGTTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACCTAAACTGTATGGA 275654 Query 107954 AGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTT 108013 ||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||||| Sbjct 275653 GGACTTGCTCCAGAGCTCAGTGCCGTGGAGATACTTACTGAATACATGTGGGACGGACTT 275594 Query 108014 CCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAG 108073 || |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| Sbjct 275593 TCCTATAAAGACCAATGCTGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAG 275534 Query 108074 TATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGT 108133 ||||||||| || |||| |||||| ||||| |||||||| ||| | ||||||||| Sbjct 275533 TATGGAGTCAGAAAAACCTACTGAGTACAAAAGGTCTCGCTGGACATATCACTATGAGGT 275474 Query 108134 GACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCAT 108193 |||||| || ||||| ||||||||||||||||| |||||||| |||||| |||| || Sbjct 275473 GACAGATGCATTGTACATAACCAGCAAGATGAAGGATCCTCCCCCGGATAATATACCTAT 275414 Query 108194 GTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAA 108253 ||||||||||||||||||| ||||||| ||||||| ||||||| |||||||| || || Sbjct 275413 GTTCACAGGGAATGCCTATATTGTGGCTTCTCGAGATTTTGTCCGGCATGTCTTGGAGAA 275354 Query 108254 CCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCT 108313 ||| || |||||||||||| | || ||||| |||||||||||||||||||| ||||| || Sbjct 275353 CCCCAAGTCCCAAAGACTGATCGAGTGGGTGAAAGACACCTATAGCCCCGATGAACATCT 275294 Query 108314 CTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTA 108373 |||||||||||||||||||| ||||||||||| || ||| |||| ||||||||||| Sbjct 275293 GTGGGCCACCCTTCAGCGTGCACCGTGGATGCCGGGTTCTATTCCCTACCACCCCAAGTT 275234 Query 108374 TCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGA 108433 ||||||||| |||||||| ||||| |||||||| ||||||||||| |||| |||||||| Sbjct 275233 TCACATCTCTGACATGACAGCCATTGCCAGGCTGGTCAAGTGGCAAAACCATGAGGGAGA 275174 Query 108434 TGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCAT 108493 |||| |||||||| ||||||||||| |||||||| | ||| | | || | |||| | Sbjct 275173 CATCAGTATGGGGGCACCTTATGCACCTTGCTCTGGGACCCACCAGCGGTCTGTCTGTGT 275114 Query 108494 TTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTT 108553 ||| ||| | ||||||||| | |||||||| || ||||||||||| ||||| |||||||| Sbjct 275113 TTATGGGACTGGGGACCTGCATTGGATTCTTCAAAACCATCACCTGTTGGCTAACAAGTT 275054 Query 108554 TGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGC 108613 |||||| | ||||||||| || || || |||||||||||||||||| ||||| ||||||| Sbjct 275053 TGACCCAAAGGTGGATGACAATGTTCTTCAGTGCTTAGAAGAGTACTTACGTTATAAGGC 274994 Query 108614 CATCTATGGGACTGAACTTTGAGCT------------------GCACTGTGGGCCAGGGA 108655 |||||||||||||||||| |||| | | ||||||| |||| | Sbjct 274993 CATCTATGGGACTGAACTCTGAGATACCCTATCAGAGAAGTGCTCCCTGTGGGGCAGGAA 274934 Query 108656 C-TGTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGG 108714 | ||||| ||| ||||||||| || |||| || |||||||||||||| ||||| | | Sbjct 274933 CATGTGCAAACGTGCCCAGGGGGTGCTGGGAC--AGTGGGGTGGGGGACCGGGGCTCTAG 274876 Query 108715 AATCCATGGCATCCCCCAGGGTCAGAGGGCTGCTTTG 108751 ||||| |||||||||| | ||||| ||| |||| || Sbjct 274875 AATCCTTGGCATCCCCAA--GTCAGGGGGTTGCTATG 274841 >seq701 Length=996996 Score = 185 bits (204), Expect = 6e-42 Identities = 585/893 (66%), Gaps = 43/893 (5%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || ||||| || || || || ||||| ||| | || Sbjct 244022 CCCCTTAGTAAAGAAGAGGAAGAGTTTCCCATAGCATATTCTATAGTGGTTCATCACAAA 243963 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| ||||| | ||| |||||||| | ||||| | Sbjct 243962 ATTGAAATGCTTGACAGGCTCCTGAGAGCCATCTATATGCCTCAGAATTTCTACTGCATT 243903 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| ||||| || | || | ||||| | | ||| |||||| Sbjct 243902 CACGTGGACAGAAAGTCAGAGGATTCCTTTTTGGCCGCGGTGATTGGCATCGCGTCCTGC 243843 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| |||||||| || ||| ||||| |||||||| ||| | Sbjct 243842 TTCAGTAATGTCTTTGTGGCCAGTCAGCTGGAGAGTGTGGTGTATGCCTCGTGGAGTCGG 243783 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGC--CATGGAAGT 107985 || || || ||||| ||||| ||| ||||| | || ||| | | ||||| ||||||| Sbjct 243782 GTTCAGGCCGACCTCAACTGCATGCAAGACCT-CTACAG-GATGAGTGCAGACTGGAAGT 243725 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| ||||| | || || ||||| || ||||| || || |||| | Sbjct 243724 ACTTGATAAATCTTTGCGGTATGGATTTTCCCATTAAAACCAACCTGGAAATTGTCCGGA 243665 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG---GTACCTTCTGAGTCCa 108102 |||||| | | | |||| | |||| | || ||||| | || || | | Sbjct 243664 AGCTCAAGTCGCTAATGGGTGAAAACAACCTAGAAACTGAGAGAATGCCATCCAA---TA 243608 Query 108103 aaaaaaaTCGCTGGAAATACCGCTA---------TGAGGTGA--CAGAC--ACACTGTAC 108149 ||||| | | |||||| | | || | | | || | ||| |||| | Sbjct 243607 AAAAAGAAAGGTGGAAAAAGCATTACACAGTTGTTAATGGGAAGCTGACGAACACGG--- 243551 Query 108150 CCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCC 108209 || ||| || | ||||||| | || | ||| |||| |||| | |||| Sbjct 243550 -GGACTGACAAAAT---GCACCCTCCTCTCGAAA---CACCTCTGTTTTCAGGCAGTGCC 243498 Query 108210 TATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGA 108269 || ||||||| | | | | || |||| |||| ||| ||| ||||| Sbjct 243497 TACTTTGTGGTCAGTAGGATGTACGTGGGGTATGTGCTAGAGAACGAAAAAATCCAAAAG 243438 Query 108270 CTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAG 108329 | | || |||| ||||| || || ||||| || || | ||||||||||| ||||| Sbjct 243437 TTTATGGAGTGGGCTAAAGATACATACAGCCCGGATGAGTATCTCTGGGCCACTATTCAG 243378 Query 108330 CGTGCTCCGTGGATG--CCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAG 108384 | | ||| | |||| || ||||| | |||| ||||| |||||| |||| || | Sbjct 243377 AG-GATCCCT-GATGTCCCAGGCTCACTGTCCTTAAGCCA---GAAGTATGACATGTCTG 243323 Query 108385 ACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGG 108444 ||||| ||| || || ||| | ||||| |||||||| ||| || ||||| || || Sbjct 243322 ACATGCATGCAATTGCAAGGTTTGTCAAATGGCAGTATTTCGAAGGGGATGTTTCCAAGG 243263 Query 108445 GGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCG 108504 | || || || |||||||| ||| ||||| | | | | ||| | | ||| |||| Sbjct 243262 GTGCCCCCTACCCACCCTGCCGTGGGGTCCATGTGCGTTCTGTGTGCGTGTTCGGAGCCG 243203 Query 108505 GGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| || ||||||| || | || || ||| | || || |||||||||||| Sbjct 243202 GGGACTTGAACTGGATGCTACGCAAGCACCACTTGTTTGCCAACAAGTTTGAC 243150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348197869726014