Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq788 107 2e-18
seq541 86.0 5e-12
seq203 86.0 5e-12
seq1526 82.4 6e-11
>seq788
Length=1000743
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| ||| ||| ||||| || || ||||| ||| || | || |||
Sbjct 445015 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTCC 445074
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || || || | || ||||| ||||| || || | |||||||||||
Sbjct 445075 AGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGG 445134
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| || || | | | | |||| | ||| ||||| | ||| || ||||||
Sbjct 445135 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 445194
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||||||| |||||||||||||| |||||
Sbjct 445195 CCCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq541
Length=1170729
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/232 (68%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| |||| | | |||| ||| || || ||| ||||| |||||||| ||
Sbjct 610505 GCCACCCCTCAGACAGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGA 610564
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| ||| | || ||||| || || || || || || | || ||| ||||| || ||
Sbjct 610565 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 610624
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| ||||| || || || || ||| || | | | |||| | ||||||
Sbjct 610625 GATGCCCTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCAC 610684
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
||||| ||| || |||||||| ||||| |||||||| ||||| ||||| |||
Sbjct 610685 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 610736
>seq203
Length=1941613
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/209 (69%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| ||| ||| |||| || || ||||| ||| || | | |||
Sbjct 1855975 ACCAAGTGCAGGGTGGACTC--TCTGGATATTATAGTCTGACAGGGTACGGCCAGCTTCC 1856032
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || || || |||| ||||| ||||| || || | ||||||||||
Sbjct 1856033 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTGG 1856092
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| || || | | | | |||| | ||| ||||| | ||| || |||||
Sbjct 1856093 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTG 1856152
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||||||| |||||||| ||||| |||||
Sbjct 1856153 CCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181
>seq1526
Length=597461
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| || ||||| | | ||||||||||| ||| ||||||||| ||||||||||| |
Sbjct 458345 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAC 458286
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTG 45219
|| ||| |||| ||||| ||||| ||||| || ||||||| ||| ||
Sbjct 458285 AGGGTGCGCCCGTCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTG 458236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394994736885931
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |