Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq19 223 3e-53
seq3332 129 6e-25
seq878 105 6e-18
>seq19
Length=4596781
Score = 223 bits (246), Expect = 3e-53
Identities = 570/860 (66%), Gaps = 21/860 (2%)
Strand=Plus/Plus
Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954
|| || || || ||||| | ||||| |||| ||||| ||||||||||||||
Sbjct 3964799 TTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC----- 3964853
Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCA 14014
||||||||||| ||||| ||||| || |||||||||||| | | || || || ||
Sbjct 3964854 CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCA 3964913
Query 14015 CAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCA 14074
||||||| || | | | || || || | |||||||||||| || ||||||
Sbjct 3964914 AAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTG 3964973
Query 14075 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 14134
|||||||| | || || || ||||| | | | || | || | | |||||
Sbjct 3964974 CAATTCATCCTAATGAGCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGA 3965033
Query 14135 ACAGCCTCGTTTATAATAAT---CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGT 14191
|| || | | ||||| || | | | | | || ||||| | || |||
Sbjct 3965034 ACGGCAT---TAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGT 3965090
Query 14192 TTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 14251
|| || || | || ||||| ||||| || | ||||||||||| ||||||||||| ||
Sbjct 3965091 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTG 3965150
Query 14252 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT 14311
||||| | | | || ||||||| | ||||| || | ||| ||||| | || || ||
Sbjct 3965151 GAAAACG-TCAGCCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAA 3965209
Query 14312 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT 14371
|| |||||||| ||||| || || |||||||| | | | ||||| || | | ||
Sbjct 3965210 CCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCC 3965269
Query 14372 TTTTTGTTCGATA-TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 14430
| |||| ||| | |||| | ||||| || | || ||| | | || ||||||
Sbjct 3965270 TCTTTG-TCGCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATTGT 3965325
Query 14431 TTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14490
| | || || || | | |||| | |||| | | | || ||| | ||||| ||
Sbjct 3965326 CTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAG 3965385
Query 14491 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCT 14550
| || ||||| ||||| || ||||||||||| || || || || ||||| ||||| |
Sbjct 3965386 GAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCG 3965445
Query 14551 AGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14610
||||||| || || ||| | ||| | || |||| |||||||| ||||| ||
Sbjct 3965446 GGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCC 3965505
Query 14611 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAG 14670
|||||| | |||| || |||| | || | ||||||| ||| ||| | ||
Sbjct 3965506 ATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAG 3965565
Query 14671 TTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14728
|| | | ||| || ||||| |||||||| || || ||| |||||||||| |
Sbjct 3965566 GGATTCCTGGT--GCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAA 3965623
Query 14729 GCAACAGCTTTTTTATACAT 14748
|| ||||||| | ||||||
Sbjct 3965624 GCCTCAGCTTTCTCATACAT 3965643
>seq3332
Length=249688
Score = 129 bits (142), Expect = 6e-25
Identities = 532/831 (64%), Gaps = 15/831 (2%)
Strand=Plus/Minus
Query 13929 CTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATG 13988
|||| || |||||||||||||| || ||||||||||| ||||| ||||||| |||||||
Sbjct 148952 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAGGTCAAATG 148893
Query 13989 GATTTGTTGACATAAACACTTTATCACAACCTAGTT-CTAATAGTAA-TCTATCCGCAAT 14046
||||| | | | || || | ||||||||| ||| ||| || || || ||
Sbjct 148892 GATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTTCTACC--TAAGTCAGTCTGCCAT 148835
Query 14047 GAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTAT 14106
||| |||||||| || ||||| || ||||| || || || || || || |
Sbjct 148834 GAATTCAATATACTGCTTTATTAACATGCAGTTCATCCCAATGAGCTTCACGGGCAAGGC 148775
Query 14107 ATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTC 14166
| | | || || | ||||| ||||| | | | | || | | | | |
Sbjct 148774 CTGTGGGAGGAACTCCTGGTCTATCCTAACAGCATTGATAGTTATTTCCTTCACTCTCTG 148715
Query 14167 ATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCC 14226
| ||||| || || ||||| || || | || ||||| | | || | ||
Sbjct 148714 CTCTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAACC 148655
Query 14227 CTCATCTCTACTAATAAGTTCGTTTGAAAAT-GTTAATCCTGGCATCAATCCTCGttttt 14285
||||||||| |||||||| || || ||||| || | || ||||||| | | ||| |
Sbjct 148654 CTCATCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTCT 148595
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||| | || | || || ||||| | ||||| || ||||||||
Sbjct 148594 TGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGT 148535
Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405
| | | ||| || | | || | ||||| | | ||| ||||| || |
Sbjct 148534 CCACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACACAAGGCCCAATCTG 148475
Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAG 14465
|| || | | || |||||| || || | || || | | ||| ||||||| |
Sbjct 148474 CCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGG 148415
Query 14466 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAG 14525
| | ||| || || ||| | || | ||| |||| ||||| || ||||||||||| |
Sbjct 148414 AATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGG 148355
Query 14526 CTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTT 14585
| || || || ||||| ||||| | ||||||| | || || ||| | | | | |
Sbjct 148354 CAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTTCTTGGCCACACCACT 148295
Query 14586 CGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AAT----ATGT 14639
| |||| |||||||| ||| | ||| |||| | ||||| || ||| ||| | ||
Sbjct 148294 CCACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAGCCAGAATGTGAACGT 148235
Query 14640 TTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGA 14697
||||| | | ||| ||| | || || ||| | | | || ||||| ||
Sbjct 148234 GGGGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGT--GTTGAATGTCCTTGGA 148177
Query 14698 AAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748
||||| || || ||| |||||||||| ||| ||||||| ||| ||||
Sbjct 148176 AAGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACAT 148126
>seq878
Length=898115
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| |
Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||||| || || || || |||||||| ||||| || || |||||||| |
Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035
Query 14346 CTATTAATCGTTCTCC 14361
| | | ||||||||
Sbjct 679034 CCACAACCCGTTCTCC 679019
Score = 100 bits (110), Expect = 3e-16
Identities = 107/139 (77%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 680878 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 680820
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 680819 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 680760
Query 13975 CATAAAATCAAATGGATTT 13993
|||||| ||||||||||||
Sbjct 680759 CATAAAGTCAAATGGATTT 680741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482244844033480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |