Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq19 223 3e-53 seq3332 129 6e-25 seq878 105 6e-18 >seq19 Length=4596781 Score = 223 bits (246), Expect = 3e-53 Identities = 570/860 (66%), Gaps = 21/860 (2%) Strand=Plus/Plus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 || || || || ||||| | ||||| |||| ||||| |||||||||||||| Sbjct 3964799 TTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC----- 3964853 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCA 14014 ||||||||||| ||||| ||||| || |||||||||||| | | || || || || Sbjct 3964854 CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCA 3964913 Query 14015 CAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCA 14074 ||||||| || | | | || || || | |||||||||||| || |||||| Sbjct 3964914 AAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTG 3964973 Query 14075 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 14134 |||||||| | || || || ||||| | | | || | || | | ||||| Sbjct 3964974 CAATTCATCCTAATGAGCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGA 3965033 Query 14135 ACAGCCTCGTTTATAATAAT---CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGT 14191 || || | | ||||| || | | | | | || ||||| | || ||| Sbjct 3965034 ACGGCAT---TAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGT 3965090 Query 14192 TTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 14251 || || || | || ||||| ||||| || | ||||||||||| ||||||||||| || Sbjct 3965091 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTG 3965150 Query 14252 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT 14311 ||||| | | | || ||||||| | ||||| || | ||| ||||| | || || || Sbjct 3965151 GAAAACG-TCAGCCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAA 3965209 Query 14312 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT 14371 || |||||||| ||||| || || |||||||| | | | ||||| || | | || Sbjct 3965210 CCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCC 3965269 Query 14372 TTTTTGTTCGATA-TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 14430 | |||| ||| | |||| | ||||| || | || ||| | | || |||||| Sbjct 3965270 TCTTTG-TCGCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATTGT 3965325 Query 14431 TTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14490 | | || || || | | |||| | |||| | | | || ||| | ||||| || Sbjct 3965326 CTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAG 3965385 Query 14491 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCT 14550 | || ||||| ||||| || ||||||||||| || || || || ||||| ||||| | Sbjct 3965386 GAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCG 3965445 Query 14551 AGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14610 ||||||| || || ||| | ||| | || |||| |||||||| ||||| || Sbjct 3965446 GGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCC 3965505 Query 14611 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAG 14670 |||||| | |||| || |||| | || | ||||||| ||| ||| | || Sbjct 3965506 ATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAG 3965565 Query 14671 TTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14728 || | | ||| || ||||| |||||||| || || ||| |||||||||| | Sbjct 3965566 GGATTCCTGGT--GCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAA 3965623 Query 14729 GCAACAGCTTTTTTATACAT 14748 || ||||||| | |||||| Sbjct 3965624 GCCTCAGCTTTCTCATACAT 3965643 >seq3332 Length=249688 Score = 129 bits (142), Expect = 6e-25 Identities = 532/831 (64%), Gaps = 15/831 (2%) Strand=Plus/Minus Query 13929 CTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATG 13988 |||| || |||||||||||||| || ||||||||||| ||||| ||||||| ||||||| Sbjct 148952 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAGGTCAAATG 148893 Query 13989 GATTTGTTGACATAAACACTTTATCACAACCTAGTT-CTAATAGTAA-TCTATCCGCAAT 14046 ||||| | | | || || | ||||||||| ||| ||| || || || || Sbjct 148892 GATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTTCTACC--TAAGTCAGTCTGCCAT 148835 Query 14047 GAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTAT 14106 ||| |||||||| || ||||| || ||||| || || || || || || | Sbjct 148834 GAATTCAATATACTGCTTTATTAACATGCAGTTCATCCCAATGAGCTTCACGGGCAAGGC 148775 Query 14107 ATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTC 14166 | | | || || | ||||| ||||| | | | | || | | | | | Sbjct 148774 CTGTGGGAGGAACTCCTGGTCTATCCTAACAGCATTGATAGTTATTTCCTTCACTCTCTG 148715 Query 14167 ATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCC 14226 | ||||| || || ||||| || || | || ||||| | | || | || Sbjct 148714 CTCTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAACC 148655 Query 14227 CTCATCTCTACTAATAAGTTCGTTTGAAAAT-GTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||| |||||||| || || ||||| || | || ||||||| | | ||| | Sbjct 148654 CTCATCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTCT 148595 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || | || || ||||| | ||||| || |||||||| Sbjct 148594 TGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGT 148535 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | | ||| || | | || | ||||| | | ||| ||||| || | Sbjct 148534 CCACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACACAAGGCCCAATCTG 148475 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAG 14465 || || | | || |||||| || || | || || | | ||| ||||||| | Sbjct 148474 CCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGG 148415 Query 14466 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAG 14525 | | ||| || || ||| | || | ||| |||| ||||| || ||||||||||| | Sbjct 148414 AATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGG 148355 Query 14526 CTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTT 14585 | || || || ||||| ||||| | ||||||| | || || ||| | | | | | Sbjct 148354 CAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTTCTTGGCCACACCACT 148295 Query 14586 CGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AAT----ATGT 14639 | |||| |||||||| ||| | ||| |||| | ||||| || ||| ||| | || Sbjct 148294 CCACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAGCCAGAATGTGAACGT 148235 Query 14640 TTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGA 14697 ||||| | | ||| ||| | || || ||| | | | || ||||| || Sbjct 148234 GGGGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGT--GTTGAATGTCCTTGGA 148177 Query 14698 AAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 ||||| || || ||| |||||||||| ||| ||||||| ||| |||| Sbjct 148176 AAGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACAT 148126 >seq878 Length=898115 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| || || || || |||||||| ||||| || || |||||||| | Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035 Query 14346 CTATTAATCGTTCTCC 14361 | | | |||||||| Sbjct 679034 CCACAACCCGTTCTCC 679019 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 680878 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 680820 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 680819 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 680760 Query 13975 CATAAAATCAAATGGATTT 13993 |||||| |||||||||||| Sbjct 680759 CATAAAGTCAAATGGATTT 680741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482244844033480