Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq788 98.7 8e-16 seq1818 87.8 1e-12 seq975 87.8 1e-12 seq182 82.4 6e-11 >seq788 Length=1000743 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||||||| | ||| |||| ||| || || || ||||| || || || ||||| | | Sbjct 444997 CCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 445056 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| |||||||||||| | | || | || || || || Sbjct 445057 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGG 445116 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || |||| | || ||||| | ||| ||||||| ||||||| Sbjct 445117 ATGCCCTCCTTGTCTTGGATTT-TGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 445175 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||| |||| || || ||||| || ||||| Sbjct 445176 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq1818 Length=636242 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 432986 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 433045 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| || ||||| ||| |||| ||||| Sbjct 433046 ATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTC 433105 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| ||| | ||| || | | | | || Sbjct 433106 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTA 433165 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | ||||||| | || || || | ||||| || ||||| ||| Sbjct 433166 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 433225 Query 18324 ATTTT 18328 ||||| Sbjct 433226 ATTTT 433230 >seq975 Length=833997 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 558473 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 558532 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| |||| ||||| Sbjct 558533 ATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTC 558592 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| ||| | ||| || | | | | || Sbjct 558593 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTA 558652 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || || || || | ||||||| | || || || | ||||| || ||||| ||| Sbjct 558653 TCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 558712 Query 18324 ATTTT 18328 ||||| Sbjct 558713 ATTTT 558717 >seq182 Length=1985155 Score = 82.4 bits (90), Expect = 6e-11 Identities = 168/246 (68%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 1378961 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 1379020 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| |||| ||||| Sbjct 1379021 ATGTTGTAGTCAGACAAAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTC 1379080 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGT 18262 || ||||| || | ||||||||||| ||| | | || || || | | | | || Sbjct 1379081 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCT-TGGCCTGTACATTTTCTATTGT 1379139 Query 18263 GTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTG 18322 | ||| || | |||| | ||||| | || || || | ||||| | ||||| || Sbjct 1379140 ACCCGAGGGTTCAGCCTCAAGGATGATGGTCTTCCCCGTAAGGGTTTTCAGGAAAATCTG 1379199 Query 18323 CATTTT 18328 ||| || Sbjct 1379200 CATCTT 1379205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379266740785695