Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq788 98.7 8e-16
seq1818 87.8 1e-12
seq975 87.8 1e-12
seq182 82.4 6e-11
>seq788
Length=1000743
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| |||||||| | ||| |||| ||| || || || ||||| || || || ||||| | |
Sbjct 444997 CCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 445056
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||||| |||||||||||| | | || | || || || ||
Sbjct 445057 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGG 445116
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||| ||||| || |||| | || ||||| | ||| ||||||| |||||||
Sbjct 445117 ATGCCCTCCTTGTCTTGGATTT-TGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 445175
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| ||||||| | ||||| |||| || || ||||| || |||||
Sbjct 445176 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq1818
Length=636242
Score = 87.8 bits (96), Expect = 1e-12
Identities = 167/245 (68%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || ||||||
Sbjct 432986 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 433045
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
||||||||||| | || || | |||||||| || ||||| ||| |||| |||||
Sbjct 433046 ATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTC 433105
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263
|| ||||| || | ||||||||||| ||| | ||| || | | | | ||
Sbjct 433106 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTA 433165
Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323
|| ||| || || | ||||||| | || || || | ||||| || ||||| |||
Sbjct 433166 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 433225
Query 18324 ATTTT 18328
|||||
Sbjct 433226 ATTTT 433230
>seq975
Length=833997
Score = 87.8 bits (96), Expect = 1e-12
Identities = 167/245 (68%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || ||||||
Sbjct 558473 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 558532
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
||||||||||| | || || | |||||||| ||| ||||| ||| |||| |||||
Sbjct 558533 ATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTC 558592
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263
|| ||||| || | ||||||||||| ||| | ||| || | | | | ||
Sbjct 558593 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTA 558652
Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323
|| || || || | ||||||| | || || || | ||||| || ||||| |||
Sbjct 558653 TCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 558712
Query 18324 ATTTT 18328
|||||
Sbjct 558713 ATTTT 558717
>seq182
Length=1985155
Score = 82.4 bits (90), Expect = 6e-11
Identities = 168/246 (68%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || ||||||
Sbjct 1378961 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 1379020
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
||||||||||| | || || | |||||||| ||| ||||| ||| |||| |||||
Sbjct 1379021 ATGTTGTAGTCAGACAAAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTC 1379080
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGT 18262
|| ||||| || | ||||||||||| ||| | | || || || | | | | ||
Sbjct 1379081 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCT-TGGCCTGTACATTTTCTATTGT 1379139
Query 18263 GTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTG 18322
| ||| || | |||| | ||||| | || || || | ||||| | ||||| ||
Sbjct 1379140 ACCCGAGGGTTCAGCCTCAAGGATGATGGTCTTCCCCGTAAGGGTTTTCAGGAAAATCTG 1379199
Query 18323 CATTTT 18328
||| ||
Sbjct 1379200 CATCTT 1379205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379266740785695
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |