Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq19 109 1e-18
seq878 84.2 4e-11
>seq19
Length=4596781
Score = 109 bits (120), Expect = 1e-18
Identities = 297/449 (66%), Gaps = 13/449 (3%)
Strand=Plus/Minus
Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967
||||| |||| | ||||||||| || ||||||||||||||| |||| | || || |
Sbjct 3965257 GGAACGGGTTGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGAC 3965198
Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027
|| |||||| ||||||| | | | ||||||| || || | |||||||| | ||
Sbjct 3965197 GATATTCTGGCTCAAGAAACGCGACCTGATGCCTGG-CTGACGTTTTCCAATGAACTTAT 3965139
Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT 102087
| || || || ||| | || | |||||||| ||| || |||| ||| | | ||
Sbjct 3965138 TAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACA---ACTGGT 3965082
Query 102088 TGATACCCCAT-CAAG-AGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAA 102145
| | || | |||| ||| || | ||||| | | | | ||||| || || ||
Sbjct 3965081 CCACAAACCTTCCAAGCAGAGAG--TGAAGGAAATAATTATTAATGCCGTTCGGATAGAG 3965024
Query 102146 CAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATG 102205
|| | || ||||| | || ||||||| || | | | ||||| |||| ||| |||
Sbjct 3965023 CAGGGGTTCCTCACGGAGACCTTGCCTGTGAAGCTCATTAGGATGAATTGCACGTTAATG 3964964
Query 102206 AGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCAC 102265
| ||||| ||||| || |||||||| ||| || | || | || | | |||
Sbjct 3964963 AAGCAGTATATTGAGTTCGTGGCAGACCGACTTATGCTGGAGCTAGGTTTTGGCAAGGTT 3964904
Query 102266 TATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAAC 102325
| | || || || || |||||||| |||||||| || | ||| |||
Sbjct 3964903 TTCAGAGTAGAAAATCCATTTGACTTCATGGAGAATATTTCACTGG-----AAGGGGAAC 3964849
Query 102326 TTTTTTGAAAAGAGAGTCGCCGAGTATCA 102354
|| |||||||||||||| | ||||||||
Sbjct 3964848 TTCTTTGAAAAGAGAGTAGGTGAGTATCA 3964820
>seq878
Length=898115
Score = 84.2 bits (92), Expect = 4e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975
|||| || |||||||| || ||||||||||||||| |||| | || || || || ||||
Sbjct 679029 TTGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGTCAATATTCT 679088
Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021
|| ||||||| | || | ||||||| ||||| | ||||||||
Sbjct 679089 GGCTCAAGAAACGCGGCCTGATGCCTGGCCTCACGTTTTCCAATGA 679134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989372120479005
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |