Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq19 109 1e-18 seq878 84.2 4e-11 >seq19 Length=4596781 Score = 109 bits (120), Expect = 1e-18 Identities = 297/449 (66%), Gaps = 13/449 (3%) Strand=Plus/Minus Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 ||||| |||| | ||||||||| || ||||||||||||||| |||| | || || | Sbjct 3965257 GGAACGGGTTGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGAC 3965198 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 || |||||| ||||||| | | | ||||||| || || | |||||||| | || Sbjct 3965197 GATATTCTGGCTCAAGAAACGCGACCTGATGCCTGG-CTGACGTTTTCCAATGAACTTAT 3965139 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT 102087 | || || || ||| | || | |||||||| ||| || |||| ||| | | || Sbjct 3965138 TAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACA---ACTGGT 3965082 Query 102088 TGATACCCCAT-CAAG-AGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAA 102145 | | || | |||| ||| || | ||||| | | | | ||||| || || || Sbjct 3965081 CCACAAACCTTCCAAGCAGAGAG--TGAAGGAAATAATTATTAATGCCGTTCGGATAGAG 3965024 Query 102146 CAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATG 102205 || | || ||||| | || ||||||| || | | | ||||| |||| ||| ||| Sbjct 3965023 CAGGGGTTCCTCACGGAGACCTTGCCTGTGAAGCTCATTAGGATGAATTGCACGTTAATG 3964964 Query 102206 AGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCAC 102265 | ||||| ||||| || |||||||| ||| || | || | || | | ||| Sbjct 3964963 AAGCAGTATATTGAGTTCGTGGCAGACCGACTTATGCTGGAGCTAGGTTTTGGCAAGGTT 3964904 Query 102266 TATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAAC 102325 | | || || || || |||||||| |||||||| || | ||| ||| Sbjct 3964903 TTCAGAGTAGAAAATCCATTTGACTTCATGGAGAATATTTCACTGG-----AAGGGGAAC 3964849 Query 102326 TTTTTTGAAAAGAGAGTCGCCGAGTATCA 102354 || |||||||||||||| | |||||||| Sbjct 3964848 TTCTTTGAAAAGAGAGTAGGTGAGTATCA 3964820 >seq878 Length=898115 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| || |||||||| || ||||||||||||||| |||| | || || || || |||| Sbjct 679029 TTGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGTCAATATTCT 679088 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||||| | || | ||||||| ||||| | |||||||| Sbjct 679089 GGCTCAAGAAACGCGGCCTGATGCCTGGCCTCACGTTTTCCAATGA 679134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989372120479005