Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq19 298 7e-76
seq348 125 9e-24
seq878 114 2e-20
seq273 111 2e-19
seq674 102 1e-16
>seq19
Length=4596781
Score = 298 bits (330), Expect = 7e-76
Identities = 639/949 (67%), Gaps = 38/949 (4%)
Strand=Plus/Plus
Query 33231 TTTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCT-TGAGACATAACTCCCA 33288
||||| ||| |||||| |||| || | |||| ||| | || | ||||| |||||||
Sbjct 3964755 TTTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCA 3964814
Query 33289 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33348
| | || || ||||| || | ||||| || || || ||||||| ||| ||||
Sbjct 3964815 TCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATAT 3964869
Query 33349 TTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAA 33408
| |||||||| ||||| ||||| || || ||| || ||| || | || |
Sbjct 3964870 TCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCA 3964929
Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468
| | || ||||| ||||| || ||||| ||||| | |||||||| | ||||
Sbjct 3964930 TAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGA 3964989
Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528
| || || || | | | | || || || | || || || || ||||| ||
Sbjct 3964990 GCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCATT------AA 3965043
Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAAT-----------AAATGTTTAAACAT 33577
||| | | || |||||||| || || || | ||||| |||||
Sbjct 3965044 TAATTAT-----TTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGTTTGAACAT 3965098
Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637
|| || || || || ||||| | |||||| ||||| ||||| | ||| || ||||||||
Sbjct 3965099 CAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGT 3965158
Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697
|| || ||||| ||| | || || || ||||| ||||| | || || || || |||||
Sbjct 3965159 CAG-CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAA 3965217
Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTC 33754
|||||||||||| || ||||||||| | | || | || || || | | | ||||
Sbjct 3965218 GAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTC 3965277
Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814
|||| | ||||| || ||||||||| ||||||||||| || | | |||
Sbjct 3965278 GCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATTGTCTGGAGGGC 3965334
Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874
|| |||||| | | |||| | ||||||||| ||| | || || | ||||| ||
Sbjct 3965335 GTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTA 3965394
Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934
||| || ||||| |||||||| ||||| || || || || |||||||| | || || ||
Sbjct 3965395 CATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 3965454
Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994
|||||| |||||| | ||| || || | || |||||||| ||||| |||||||| |
Sbjct 3965455 AATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGG 3965514
Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC- 34053
|||| || |||| || || || ||| ||| | || || || | || |||||
Sbjct 3965515 CACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAG-GGATTCCT 3965573
Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
| | || || || || | |||||| ||||| |||||||||| || ||||| || |
Sbjct 3965574 GGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTT 3965633
Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162
| | |||||| | ||| || ||| | || | || ||||| || |||||
Sbjct 3965634 TCTCATACATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682
>seq348
Length=1658837
Score = 125 bits (138), Expect = 9e-24
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| ||||| ||||| ||||| || || || |||||||| ||||| |
Sbjct 305688 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 305629
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 305628 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 305569
Query 62508 CTATTTCTAAGACCGTA 62524
|| ||||| | ||| ||
Sbjct 305568 CTGTTTCTTATACCATA 305552
Score = 123 bits (136), Expect = 3e-23
Identities = 130/171 (76%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172
|||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| |
Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312
Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232
||| |||||| |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252
Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283
| |||| ||||||||||| ||| ||||||| | |||| | || || ||||
Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201
Score = 109 bits (120), Expect = 7e-19
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685
|||| || |||||||| || | || || || || | ||| || || || || || || |
Sbjct 300817 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 300758
Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745
||||||||||||||||||||| |||||| || || ||||| || || ||||| ||||
Sbjct 300757 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 300698
Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805
| | | |||||||| || || || | ||||| || || || || || || | ||| |
Sbjct 300697 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 300638
Query 62806 TCTTATTAGA 62815
||||| ||
Sbjct 300637 GTTTATTTGA 300628
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| |||||||||||| |||||||| ||||||||||| || | || || || || | |
Sbjct 296257 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 296198
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 296197 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCA 296138
Query 63383 CGGTTCCAAGTATATGGC 63400
|| |||| ||| || ||
Sbjct 296137 AGGCTCCAGGTAAATAGC 296120
>seq878
Length=898115
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || |
Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| ||||| || || || || || ||||||||||||||||| || |||||||| |
Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035
Query 33724 C 33724
|
Sbjct 679034 C 679034
>seq273
Length=1703854
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|||||||||||||||| | ||| || | ||||| || || |||||||||| || |||
Sbjct 1335613 GTTACTTTCTATGATGTGTATATTATTCTCCAAGCATTTATACTGACTACTGCTGTATTT 1335672
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||| | ||||| || ||||||||| || |||||||||||||||||| ||| | ||||
Sbjct 1335673 CTTGGTTTGACTGTATATACTCTACAGTCTAAGAGAGATTTCAGTAAATTTGGAGCAGG 1335731
Score = 86.0 bits (94), Expect = 8e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231
|||||||||||||||||||| |||||||||| ||||| ||||| || ||||| ||||||
Sbjct 1313169 TGCTCCTCCATCGAGGACGATTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGTGTGCAC 1313228
Query 188232 ATACGAATGG 188241
|| ||| |||
Sbjct 1313229 ATCCGACTGG 1313238
>seq674
Length=1058379
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665
|| ||||| || || | ||| || |||||||||||||||||||| || || | || ||
Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189
Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724
||||| ||||| | ||| || ||||| || ||||| || |||||||| |||||||| ||
Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 558130
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139
|| ||||| | ||||| || ||||||| ||||||||||||||| ||||| || ||| |
Sbjct 547037 ACCTCTTCGGCCGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCAGGG 546978
Query 34140 TATTGGATTGGGAAAATAACAAATC 34164
|||||||||||||| || |||||||
Sbjct 546977 TATTGGATTGGGAAGATGACAAATC 546953
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
|||||||||||||| ||||||||||||||||||||||| || |||| || ||||||
Sbjct 552682 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 552623
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074
|| || || || | | | || || ||||| | | || ||| || ||||
Sbjct 552622 TACTTCTCATCCGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 552574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629686038976080
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