Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq19 298 7e-76 seq348 125 9e-24 seq878 114 2e-20 seq273 111 2e-19 seq674 102 1e-16 >seq19 Length=4596781 Score = 298 bits (330), Expect = 7e-76 Identities = 639/949 (67%), Gaps = 38/949 (4%) Strand=Plus/Plus Query 33231 TTTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCT-TGAGACATAACTCCCA 33288 ||||| ||| |||||| |||| || | |||| ||| | || | ||||| ||||||| Sbjct 3964755 TTTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCA 3964814 Query 33289 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33348 | | || || ||||| || | ||||| || || || ||||||| ||| |||| Sbjct 3964815 TCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATAT 3964869 Query 33349 TTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAA 33408 | |||||||| ||||| ||||| || || ||| || ||| || | || | Sbjct 3964870 TCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCA 3964929 Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 | | || ||||| ||||| || ||||| ||||| | |||||||| | |||| Sbjct 3964930 TAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGA 3964989 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || || || | | | | || || || | || || || || ||||| || Sbjct 3964990 GCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCATT------AA 3965043 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAAT-----------AAATGTTTAAACAT 33577 ||| | | || |||||||| || || || | ||||| ||||| Sbjct 3965044 TAATTAT-----TTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGTTTGAACAT 3965098 Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 || || || || || ||||| | |||||| ||||| ||||| | ||| || |||||||| Sbjct 3965099 CAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGT 3965158 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 || || ||||| ||| | || || || ||||| ||||| | || || || || ||||| Sbjct 3965159 CAG-CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAA 3965217 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTC 33754 |||||||||||| || ||||||||| | | || | || || || | | | |||| Sbjct 3965218 GAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTC 3965277 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 |||| | ||||| || ||||||||| ||||||||||| || | | ||| Sbjct 3965278 GCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATTGTCTGGAGGGC 3965334 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 || |||||| | | |||| | ||||||||| ||| | || || | ||||| || Sbjct 3965335 GTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTA 3965394 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||| || ||||| |||||||| ||||| || || || || |||||||| | || || || Sbjct 3965395 CATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 3965454 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 |||||| |||||| | ||| || || | || |||||||| ||||| |||||||| | Sbjct 3965455 AATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGG 3965514 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC- 34053 |||| || |||| || || || ||| ||| | || || || | || ||||| Sbjct 3965515 CACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAG-GGATTCCT 3965573 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | || || || || | |||||| ||||| |||||||||| || ||||| || | Sbjct 3965574 GGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTT 3965633 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | | |||||| | ||| || ||| | || | || ||||| || ||||| Sbjct 3965634 TCTCATACATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682 >seq348 Length=1658837 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 305688 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 305629 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 305628 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 305569 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 305568 CTGTTTCTTATACCATA 305552 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| | Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | |||| ||||||||||| ||| ||||||| | |||| | || || |||| Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201 Score = 109 bits (120), Expect = 7e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || || || || | Sbjct 300817 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 300758 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||||| |||||| || || ||||| || || ||||| |||| Sbjct 300757 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 300698 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || || || || || || | ||| | Sbjct 300697 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 300638 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 300637 GTTTATTTGA 300628 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || || || | | Sbjct 296257 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 296198 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 296197 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCA 296138 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 296137 AGGCTCCAGGTAAATAGC 296120 >seq878 Length=898115 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || | Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||| || |||||||| | Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035 Query 33724 C 33724 | Sbjct 679034 C 679034 >seq273 Length=1703854 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | ||| || | ||||| || || |||||||||| || ||| Sbjct 1335613 GTTACTTTCTATGATGTGTATATTATTCTCCAAGCATTTATACTGACTACTGCTGTATTT 1335672 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || ||||||||| || |||||||||||||||||| ||| | |||| Sbjct 1335673 CTTGGTTTGACTGTATATACTCTACAGTCTAAGAGAGATTTCAGTAAATTTGGAGCAGG 1335731 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||||||||||||||| |||||||||| ||||| ||||| || ||||| |||||| Sbjct 1313169 TGCTCCTCCATCGAGGACGATTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGTGTGCAC 1313228 Query 188232 ATACGAATGG 188241 || ||| ||| Sbjct 1313229 ATCCGACTGG 1313238 >seq674 Length=1058379 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || |||||||||||||||||||| || || | || || Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| || |||||||| |||||||| || Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 558130 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| | ||||| || ||||||| ||||||||||||||| ||||| || ||| | Sbjct 547037 ACCTCTTCGGCCGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCAGGG 546978 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 |||||||||||||| || ||||||| Sbjct 546977 TATTGGATTGGGAAGATGACAAATC 546953 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| ||||||||||||||||||||||| || |||| || |||||| Sbjct 552682 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 552623 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 || || || || | | | || || ||||| | | || ||| || |||| Sbjct 552622 TACTTCTCATCCGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 552574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629686038976080