Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq19 253 2e-62 seq674 120 3e-22 seq878 111 1e-19 seq348 102 8e-17 >seq19 Length=4596781 Score = 253 bits (280), Expect = 2e-62 Identities = 606/904 (67%), Gaps = 32/904 (4%) Strand=Plus/Plus Query 11320 ATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTT 11379 ||||| | ||| |||||| | ||||| |||| |||| || || ||| || | | Sbjct 3964798 ATTTGACATCACTCCCATCCTCTGATACTCACCTACTC-TCTTTTCAAAGAAGT----TC 3964852 Query 11380 ACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTC 11439 ||||| ||||| |||| |||||| ||| ||| ||||| | ||| |||| || || | Sbjct 3964853 CCCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCC 3964912 Query 11440 ACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACA 11499 | |||||| ||| | | || ||||| ||||| || |||||||| |||||| Sbjct 3964913 AAAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGT 3964972 Query 11500 ACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATT 11559 |||||||| | || || | ||| || | | | || | ||| ||| ||||| Sbjct 3964973 GCAATTCATCCTAATGAGCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCG 3965032 Query 11560 AACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTT 11619 ||| |||| ||| ||||| | | | | ||| || ||| || | | ||||| Sbjct 3965033 AACGGCATTAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGTTT 3965092 Query 11620 AAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGA 11679 ||||| | || ||||| ||||| |||||||| || ||||| || || |||||||| || Sbjct 3965093 GAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGA 3965152 Query 11680 AAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACC 11739 ||| || | || ||||||| | ||||| || | ||| ||||| | ||||| ||||| Sbjct 3965153 AAACGTCAG-CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACC 3965211 Query 11740 AGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACC--- 11794 ||||||||| ||||| |||||||| ||||| | || || | ||| || || || | Sbjct 3965212 AGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTC 3965271 Query 11795 -TTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGT 11853 |||| || || |||| | |||||| || || |||||| || || |||||| Sbjct 3965272 TTTGTCGCCAG---TCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATTGT 3965325 Query 11854 TTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTATT 11911 | | ||||| || | | ||| ||||| |||| | || || | || || Sbjct 3965326 CTGGAGGGCGTTGAAGAGAA--ATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATG 3965383 Query 11912 AATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACAT 11971 | | ||| ||||| || ||||| || |||||||| || ||||| || ||||||||||| Sbjct 3965384 AGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 3965443 Query 11972 CGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATA 12031 || || |||| | ||| || || ||| | ||| | || || |||||||| || Sbjct 3965444 CGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATG 3965503 Query 12032 CCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAG-- 12089 |||||||| | |||| || || || | || || ||||||| | || || || Sbjct 3965504 CCATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTC---AGGC 3965560 Query 12090 TTAATTTATCCCAATCAT-CTAAA--TCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 || | || || | | || || || || || | ||| || |||||| | ||||||| Sbjct 3965561 TTCAGGGATTCC--TGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAA 3965618 Query 12147 AACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAA 12206 | ||| | | || | |||||| | ||| |||||| | |||| | |||||| || | Sbjct 3965619 AGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGA 3965678 Query 12207 CGAA 12210 | || Sbjct 3965679 CAAA 3965682 >seq674 Length=1058379 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||||||||| | |||| ||| | Sbjct 558250 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 558191 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| || || || ||||| ||||| | Sbjct 558190 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 558131 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 558130 CCACCACTCTTTCCCC 558115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| ||||| ||||| ||||| |||| ||| || || Sbjct 553569 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 553510 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | |||||| ||| Sbjct 553509 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGTACCTCC 553464 >seq878 Length=898115 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | || ||||||| || ||||| || Sbjct 679152 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 679093 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| |||||||| ||||| || Sbjct 679092 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 679033 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 679032 ACAACCCGTTCTCC 679019 >seq348 Length=1658837 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| ||||| ||||||||| Sbjct 305688 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 305629 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || ||||||||||| || || || || | Sbjct 305628 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 305569 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 305568 CTGTTTCTTATACCAT 305553 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| |||||||||||||| ||||| | || |||| | | | || | || Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| ||||| |||||||| || || |||||||| || |||||||| | | || || Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | || || || |||||||| || ||||| | ||| || Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTT 308215 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| || || || | | || Sbjct 288017 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 287958 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | ||||||| || | ||| |||||||| | | Sbjct 287957 TATGTTTCAATAGCAGCATCAATATCTTCTGCGTGAATCCCCACAGACACCCTCATCAAC 287898 Query 38533 ATATGTTGTGGTCTTTCT 38550 |||||||||||||||||| Sbjct 287897 ATATGTTGTGGTCTTTCT 287880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468426931025840