Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq19 253 2e-62
seq674 120 3e-22
seq878 111 1e-19
seq348 102 8e-17
>seq19
Length=4596781
Score = 253 bits (280), Expect = 2e-62
Identities = 606/904 (67%), Gaps = 32/904 (4%)
Strand=Plus/Plus
Query 11320 ATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTT 11379
||||| | ||| |||||| | ||||| |||| |||| || || ||| || | |
Sbjct 3964798 ATTTGACATCACTCCCATCCTCTGATACTCACCTACTC-TCTTTTCAAAGAAGT----TC 3964852
Query 11380 ACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTC 11439
||||| ||||| |||| |||||| ||| ||| ||||| | ||| |||| || || |
Sbjct 3964853 CCCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCC 3964912
Query 11440 ACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACA 11499
| |||||| ||| | | || ||||| ||||| || |||||||| ||||||
Sbjct 3964913 AAAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGT 3964972
Query 11500 ACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATT 11559
|||||||| | || || | ||| || | | | || | ||| ||| |||||
Sbjct 3964973 GCAATTCATCCTAATGAGCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCG 3965032
Query 11560 AACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTT 11619
||| |||| ||| ||||| | | | | ||| || ||| || | | |||||
Sbjct 3965033 AACGGCATTAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGTTT 3965092
Query 11620 AAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGA 11679
||||| | || ||||| ||||| |||||||| || ||||| || || |||||||| ||
Sbjct 3965093 GAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGA 3965152
Query 11680 AAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACC 11739
||| || | || ||||||| | ||||| || | ||| ||||| | ||||| |||||
Sbjct 3965153 AAACGTCAG-CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACC 3965211
Query 11740 AGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACC--- 11794
||||||||| ||||| |||||||| ||||| | || || | ||| || || || |
Sbjct 3965212 AGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTC 3965271
Query 11795 -TTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGT 11853
|||| || || |||| | |||||| || || |||||| || || ||||||
Sbjct 3965272 TTTGTCGCCAG---TCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATTGT 3965325
Query 11854 TTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTATT 11911
| | ||||| || | | ||| ||||| |||| | || || | || ||
Sbjct 3965326 CTGGAGGGCGTTGAAGAGAA--ATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATG 3965383
Query 11912 AATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACAT 11971
| | ||| ||||| || ||||| || |||||||| || ||||| || |||||||||||
Sbjct 3965384 AGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 3965443
Query 11972 CGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATA 12031
|| || |||| | ||| || || ||| | ||| | || || |||||||| ||
Sbjct 3965444 CGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATG 3965503
Query 12032 CCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAG-- 12089
|||||||| | |||| || || || | || || ||||||| | || || ||
Sbjct 3965504 CCATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTC---AGGC 3965560
Query 12090 TTAATTTATCCCAATCAT-CTAAA--TCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146
|| | || || | | || || || || || | ||| || |||||| | |||||||
Sbjct 3965561 TTCAGGGATTCC--TGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAA 3965618
Query 12147 AACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAA 12206
| ||| | | || | |||||| | ||| |||||| | |||| | |||||| || |
Sbjct 3965619 AGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGA 3965678
Query 12207 CGAA 12210
| ||
Sbjct 3965679 CAAA 3965682
>seq674
Length=1058379
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||||||||| | |||| ||| |
Sbjct 558250 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 558191
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| || || || ||||| ||||| |
Sbjct 558190 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 558131
Query 11772 CTACTACTCTTTCTCC 11787
| || |||||||| ||
Sbjct 558130 CCACCACTCTTTCCCC 558115
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949
|||||| | || || ||||||| ||||| ||||| ||||| |||| ||| || ||
Sbjct 553569 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 553510
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995
|||||||| ||||||||||| || ||||||| | |||||| |||
Sbjct 553509 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGTACCTCC 553464
>seq878
Length=898115
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| ||||| || | || ||||||| || ||||| ||
Sbjct 679152 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 679093
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| ||||| |||||||| ||||| ||
Sbjct 679092 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 679033
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||||||
Sbjct 679032 ACAACCCGTTCTCC 679019
>seq348
Length=1658837
Score = 102 bits (112), Expect = 8e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | ||||| || ||||| ||||| |||||||||
Sbjct 305688 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 305629
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || ||||||||||| || || || || |
Sbjct 305628 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 305569
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 305568 CTGTTTCTTATACCAT 305553
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922
|||| ||||| |||||||||||||| ||||| | || |||| | | | || | ||
Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312
Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982
||| ||||| |||||||| || || |||||||| || |||||||| | | || ||
Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252
Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019
| || || || |||||||| || ||||| | ||| ||
Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTT 308215
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472
|| || || || || | || ||||| ||||| | ||||| || || || | | ||
Sbjct 288017 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 287958
Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532
|||||||| || || |||| ||||| | ||||||| || | ||| |||||||| | |
Sbjct 287957 TATGTTTCAATAGCAGCATCAATATCTTCTGCGTGAATCCCCACAGACACCCTCATCAAC 287898
Query 38533 ATATGTTGTGGTCTTTCT 38550
||||||||||||||||||
Sbjct 287897 ATATGTTGTGGTCTTTCT 287880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468426931025840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |