Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq19 279 7e-70
seq3332 235 7e-57
seq273 161 1e-34
seq348 131 2e-25
seq878 123 3e-23
seq674 107 3e-18
>seq19
Length=4596781
Score = 279 bits (308), Expect = 7e-70
Identities = 425/600 (71%), Gaps = 9/600 (2%)
Strand=Plus/Plus
Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202
||||| ||||||| || || || || ||||||| |||||| ||||| ||||| | |||
Sbjct 3965088 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCA 3965147
Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262
||||||||||| || || ||||| ||| | || || || ||||| ||||| | ||||||
Sbjct 3965148 TTGGAAAACGTCAG-CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAA 3965206
Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 36319
|| ||||||||||| |||||||| || || |||||| | | || | || || || |
Sbjct 3965207 GAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTA 3965266
Query 36320 CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 36379
| | |||| |||| | ||||| || ||||||||| ||||||||||||
Sbjct 3965267 GCCTCTTTGTCGCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATT 3965323
Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439
|||| | || || |||||| | | |||| | ||||||||| || | |||||
Sbjct 3965324 GTCTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATG 3965383
Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499
| ||||| ||||| || ||||| |||||||| ||||| ||||| || || ||||||||
Sbjct 3965384 AGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 3965443
Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 36559
| || || |||||||| |||||| | ||| || || | || |||||||| |||||
Sbjct 3965444 CGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATG 3965503
Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619
|| ||||| | |||| || |||| || || || ||| ||| | || | || |
Sbjct 3965504 CCATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTC 3965563
Query 36620 AGTTTATTCC-AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 36678
|| ||||| | | || || || || | |||||| ||||| |||||||||| ||
Sbjct 3965564 AG-GGATTCCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGA 3965622
Query 36679 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738
||||| || || | |||||| | ||| || ||| | || | | || || || |||||
Sbjct 3965623 AGCCTCAGCTTTCTCATACATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682
>seq3332
Length=249688
Score = 235 bits (260), Expect = 7e-57
Identities = 420/607 (69%), Gaps = 12/607 (2%)
Strand=Plus/Minus
Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202
||||| ||||||| || || || | ||||| |||||| ||||| ||||| | ||
Sbjct 148692 TGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAACCCTCATCTCTGCTAATAAGCTCA 148633
Query 36203 TTGGAAAAC-GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 36261
||||||||| ||||| || ||||| |||| | || || ||||| ||||| |||||| |
Sbjct 148632 TTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGA 148573
Query 36262 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--- 36318
|| ||| ||||| | |||||||| || |||||| | | | | || || ||
Sbjct 148572 AGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGT 148513
Query 36319 ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 36378
| | | |||| | ||| |||||||| |||||||| || ||||||||||
Sbjct 148512 AGCCTCTTTGTCCCCAACCCAACACAAGGCCCAATCTGCCTTCTTCCTTCCACAAGGCAT 148453
Query 36379 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 36438
|||||| || | || |||||| | | | | || || |||||||| ||| || ||| |
Sbjct 148452 TGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGT 148393
Query 36439 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 36498
| |||||| |||| || ||||| |||||||| ||||| ||||| || || ||||||||
Sbjct 148392 GAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACA 148333
Query 36499 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 36558
| || || || ||||| |||||| | | | | || | || |||||||| ||| |
Sbjct 148332 GCAGGCTTCTGTCATCTGAACTTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTGT 148273
Query 36559 TCCGTCACTGGCTGCAAAAAACGCC--AAT----ACATGTTTTATAAAATATTTTTCGTT 36612
|| |||| | ||||| || ||| ||| || || |||||||| | | || |
Sbjct 148272 GCCAACACTCACCGCAAAGAAAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTC 148213
Query 36613 TGGTGTTAGTTTATTCCAATCATTG-ATATCTTTAGATATATCCACTTCTTCCACTGTCC 36671
|| | || ||||| | ||| || || || || | || ||| ||||| ||||||
Sbjct 148212 AGGCTTCAG-CGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCC 148154
Query 36672 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAA 36731
|||| || ||||| || || ||| |||| | ||| | |||||| || | || || || |
Sbjct 148153 AAAAGGAAGCCTCAGCTTTCTTACACATCTGCCAAAGGTCATGGTACTTCATAGGGAAGA 148094
Query 36732 TAACAAA 36738
| |||||
Sbjct 148093 TGACAAA 148087
>seq273
Length=1703854
Score = 161 bits (178), Expect = 1e-34
Identities = 157/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290
|| |||||| | ||||||||| | ||||| |||| ||| || ||||||| |||||||
Sbjct 1342656 TTTTTATTAACTGCTTCCAAAAAGCGCAACAGGTGCAGGAATAGGTTGATGACATCCAAG 1342597
Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350
|||| |||| | ||||| ||||| |||||||| || |||||||| || | ||||||
Sbjct 1342596 TAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGCTTATGCATCAATGAGTGT 1342537
Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410
||||||||||| |||||||| ||||| | ||||| || | ||||| || || || ||||
Sbjct 1342536 GTGTCATAGATGATGAATCCACAGAAAAGCAGGGCTCCCACAGCAGCCAAGATCAACTCC 1342477
Query 9411 ACTGTTTCACTTTGCACAAATA 9432
| ||||| ||| | | |||||
Sbjct 1342476 ATTGTTTGACTATAGAAAAATA 1342455
Score = 138 bits (152), Expect = 1e-27
Identities = 102/119 (86%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| |||||||||||||||||| || |||||||||||| |||||| | |||||
Sbjct 1335731 CCTGCTCCAAATTTACTGAAATCTCTCTTAGACTGTAGAGTATATACAGTCAAACCAAGA 1335672
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| || ||||||||||| || || ||||| | || | || ||||||||||||||||||
Sbjct 1335671 AATACAGCAGTAGTCAGTATAAATGCTTGGAGAATAATATACACATCATAGAAAGTAAC 1335613
Score = 104 bits (114), Expect = 3e-17
Identities = 90/108 (83%), Gaps = 4/108 (4%)
Strand=Plus/Minus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
||| ||| |||||||||||||| || ||||| |||||||||||||||| ||||||||||
Sbjct 1313238 CCAGTCGGATGTGCACACTGGCGGAGGCCACGCAGCTGCCATAGTTGAAATCGTCCTCGA 1313179
Query 9907 TGGAGGAGCACGCGTAGAGG--CTC-GGCATGGCCATGGCGGC-GCAG 9950
|||||||||| | |||| || || || |||||||| |||| ||||
Sbjct 1313178 TGGAGGAGCAGGGGTAGCGGGAGTCGGGGTTGGCCATGTCGGCAGCAG 1313131
>seq348
Length=1658837
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| |
Sbjct 305688 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 305629
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 305628 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 305569
Query 65301 CTATTTCTAAGACCGTA 65317
|| ||||| | ||| ||
Sbjct 305568 CTGTTTCTTATACCATA 305552
Score = 123 bits (136), Expect = 3e-23
Identities = 130/171 (76%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965
|||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| |
Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312
Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025
||| |||||| |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252
Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076
| |||| ||||||||||| ||| ||||||| | |||| | || || ||||
Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201
Score = 104 bits (114), Expect = 3e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478
|||| || || ||||| || | || || || || ||||| || || || || || || |
Sbjct 300817 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 300758
Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538
||||||||||||| ||||||| |||||| || || ||||| | || ||||| ||||
Sbjct 300757 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 300698
Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598
| | | |||||||| || ||||| | ||||| || || || || || || | ||| |
Sbjct 300697 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 300638
Query 65599 TCTTATTAGA 65608
||||| ||
Sbjct 300637 GTTTATTTGA 300628
Score = 96.9 bits (106), Expect = 5e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||||||||| |||||||| ||||||||||| || | || | || |||| |
Sbjct 296257 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 296198
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 296197 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCA 296138
Query 66176 CGGTTCCAAGTATATGGC 66193
|| |||| ||| || ||
Sbjct 296137 AGGCTCCAGGTAAATAGC 296120
Score = 95.1 bits (104), Expect = 2e-14
Identities = 131/182 (72%), Gaps = 5/182 (3%)
Strand=Plus/Minus
Query 66786 TCCTCCA---TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 66842
||||||| |||| |||| || | ||| |||||||||||||| | || || |||||
Sbjct 282591 TCCTCCAGACTCAC--CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCA 282534
Query 66843 ATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 66902
|| || || || | |||||||| || ||||| | || || | || || ||| | ||
Sbjct 282533 ATCCTTGCTGCCAGGATGGCATAGTCAGGATGCTTAGTTGTCAAGGTCGCAGCTGTCTCA 282474
Query 66903 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 66962
|| |||| ||| || | ||| || || || || ||| | |||| |||||||| || |||
Sbjct 282473 GCAGCCAAAGTATCTAGTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTC 282414
Query 66963 AT 66964
||
Sbjct 282413 AT 282412
>seq878
Length=898115
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || |
Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||| |||||||| || ||||||||||| |||||||| || || ||||| |
Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035
Query 36300 C 36300
|
Sbjct 679034 C 679034
>seq674
Length=1058379
Score = 107 bits (118), Expect = 3e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|| ||||| || || | ||| ||||||||||||||||||||||| || || | || ||
Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300
||||| ||||| | ||||| ||||| || |||||||| |||||||| || ||||| ||
Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 558130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658035315929240
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