Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq19 279 7e-70 seq3332 235 7e-57 seq273 161 1e-34 seq348 131 2e-25 seq878 123 3e-23 seq674 107 3e-18 >seq19 Length=4596781 Score = 279 bits (308), Expect = 7e-70 Identities = 425/600 (71%), Gaps = 9/600 (2%) Strand=Plus/Plus Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 ||||| ||||||| || || || || ||||||| |||||| ||||| ||||| | ||| Sbjct 3965088 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCA 3965147 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262 ||||||||||| || || ||||| ||| | || || || ||||| ||||| | |||||| Sbjct 3965148 TTGGAAAACGTCAG-CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAA 3965206 Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 36319 || ||||||||||| |||||||| || || |||||| | | || | || || || | Sbjct 3965207 GAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTA 3965266 Query 36320 CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 36379 | | |||| |||| | ||||| || ||||||||| |||||||||||| Sbjct 3965267 GCCTCTTTGTCGCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATT 3965323 Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 |||| | || || |||||| | | |||| | ||||||||| || | ||||| Sbjct 3965324 GTCTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATG 3965383 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 | ||||| ||||| || ||||| |||||||| ||||| ||||| || || |||||||| Sbjct 3965384 AGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 3965443 Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 36559 | || || |||||||| |||||| | ||| || || | || |||||||| ||||| Sbjct 3965444 CGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATG 3965503 Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619 || ||||| | |||| || |||| || || || ||| ||| | || | || | Sbjct 3965504 CCATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTC 3965563 Query 36620 AGTTTATTCC-AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 36678 || ||||| | | || || || || | |||||| ||||| |||||||||| || Sbjct 3965564 AG-GGATTCCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGA 3965622 Query 36679 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 ||||| || || | |||||| | ||| || ||| | || | | || || || ||||| Sbjct 3965623 AGCCTCAGCTTTCTCATACATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682 >seq3332 Length=249688 Score = 235 bits (260), Expect = 7e-57 Identities = 420/607 (69%), Gaps = 12/607 (2%) Strand=Plus/Minus Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 ||||| ||||||| || || || | ||||| |||||| ||||| ||||| | || Sbjct 148692 TGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAACCCTCATCTCTGCTAATAAGCTCA 148633 Query 36203 TTGGAAAAC-GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 36261 ||||||||| ||||| || ||||| |||| | || || ||||| ||||| |||||| | Sbjct 148632 TTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGA 148573 Query 36262 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--- 36318 || ||| ||||| | |||||||| || |||||| | | | | || || || Sbjct 148572 AGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGT 148513 Query 36319 ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 36378 | | | |||| | ||| |||||||| |||||||| || |||||||||| Sbjct 148512 AGCCTCTTTGTCCCCAACCCAACACAAGGCCCAATCTGCCTTCTTCCTTCCACAAGGCAT 148453 Query 36379 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 36438 |||||| || | || |||||| | | | | || || |||||||| ||| || ||| | Sbjct 148452 TGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGT 148393 Query 36439 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 36498 | |||||| |||| || ||||| |||||||| ||||| ||||| || || |||||||| Sbjct 148392 GAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACA 148333 Query 36499 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 36558 | || || || ||||| |||||| | | | | || | || |||||||| ||| | Sbjct 148332 GCAGGCTTCTGTCATCTGAACTTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTGT 148273 Query 36559 TCCGTCACTGGCTGCAAAAAACGCC--AAT----ACATGTTTTATAAAATATTTTTCGTT 36612 || |||| | ||||| || ||| ||| || || |||||||| | | || | Sbjct 148272 GCCAACACTCACCGCAAAGAAAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTC 148213 Query 36613 TGGTGTTAGTTTATTCCAATCATTG-ATATCTTTAGATATATCCACTTCTTCCACTGTCC 36671 || | || ||||| | ||| || || || || | || ||| ||||| |||||| Sbjct 148212 AGGCTTCAG-CGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCC 148154 Query 36672 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAA 36731 |||| || ||||| || || ||| |||| | ||| | |||||| || | || || || | Sbjct 148153 AAAAGGAAGCCTCAGCTTTCTTACACATCTGCCAAAGGTCATGGTACTTCATAGGGAAGA 148094 Query 36732 TAACAAA 36738 | ||||| Sbjct 148093 TGACAAA 148087 >seq273 Length=1703854 Score = 161 bits (178), Expect = 1e-34 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | ||||| |||| ||| || ||||||| ||||||| Sbjct 1342656 TTTTTATTAACTGCTTCCAAAAAGCGCAACAGGTGCAGGAATAGGTTGATGACATCCAAG 1342597 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| |||| | ||||| ||||| |||||||| || |||||||| || | |||||| Sbjct 1342596 TAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGCTTATGCATCAATGAGTGT 1342537 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||| ||||| | ||||| || | ||||| || || || |||| Sbjct 1342536 GTGTCATAGATGATGAATCCACAGAAAAGCAGGGCTCCCACAGCAGCCAAGATCAACTCC 1342477 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 | ||||| ||| | | ||||| Sbjct 1342476 ATTGTTTGACTATAGAAAAATA 1342455 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| |||||||||||||||||| || |||||||||||| |||||| | ||||| Sbjct 1335731 CCTGCTCCAAATTTACTGAAATCTCTCTTAGACTGTAGAGTATATACAGTCAAACCAAGA 1335672 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || ||||||||||| || || ||||| | || | || |||||||||||||||||| Sbjct 1335671 AATACAGCAGTAGTCAGTATAAATGCTTGGAGAATAATATACACATCATAGAAAGTAAC 1335613 Score = 104 bits (114), Expect = 3e-17 Identities = 90/108 (83%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||| ||| |||||||||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 1313238 CCAGTCGGATGTGCACACTGGCGGAGGCCACGCAGCTGCCATAGTTGAAATCGTCCTCGA 1313179 Query 9907 TGGAGGAGCACGCGTAGAGG--CTC-GGCATGGCCATGGCGGC-GCAG 9950 |||||||||| | |||| || || || |||||||| |||| |||| Sbjct 1313178 TGGAGGAGCAGGGGTAGCGGGAGTCGGGGTTGGCCATGTCGGCAGCAG 1313131 >seq348 Length=1658837 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 305688 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 305629 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 305628 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 305569 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 305568 CTGTTTCTTATACCATA 305552 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| | Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | |||| ||||||||||| ||| ||||||| | |||| | || || |||| Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 300817 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 300758 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||||| |||||| || || ||||| | || ||||| |||| Sbjct 300757 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 300698 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || || || || || || | ||| | Sbjct 300697 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 300638 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 300637 GTTTATTTGA 300628 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 296257 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 296198 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 296197 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCA 296138 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 296137 AGGCTCCAGGTAAATAGC 296120 Score = 95.1 bits (104), Expect = 2e-14 Identities = 131/182 (72%), Gaps = 5/182 (3%) Strand=Plus/Minus Query 66786 TCCTCCA---TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 66842 ||||||| |||| |||| || | ||| |||||||||||||| | || || ||||| Sbjct 282591 TCCTCCAGACTCAC--CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCA 282534 Query 66843 ATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 66902 || || || || | |||||||| || ||||| | || || | || || ||| | || Sbjct 282533 ATCCTTGCTGCCAGGATGGCATAGTCAGGATGCTTAGTTGTCAAGGTCGCAGCTGTCTCA 282474 Query 66903 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 66962 || |||| ||| || | ||| || || || || ||| | |||| |||||||| || ||| Sbjct 282473 GCAGCCAAAGTATCTAGTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTC 282414 Query 66963 AT 66964 || Sbjct 282413 AT 282412 >seq878 Length=898115 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || | Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| |||||||| || ||||||||||| |||||||| || || ||||| | Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035 Query 36300 C 36300 | Sbjct 679034 C 679034 >seq674 Length=1058379 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| ||||||||||||||||||||||| || || | || || Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || |||||||| |||||||| || ||||| || Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 558130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658035315929240